Job Description P33224 Confidence 100.00% Date Thu Jan 5 11:51:23 GMT 2012 Rank 2 Aligned Residues 485 % Identity 19% Template c2z1qA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of acyl coa dehydrogenase Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	Q	T	H	T	V	F	N	Q	P	I	P	L	N	N	S	N	L	Y	L	S	D	G	A	L	C	E	A	V	T	R	E	G	A	G	W	D	S	D	F	L	A	S	I	G	Q	Q	L	G	T	A	E	S	L	E	L	G	R	L	A	N	V	N	P	P	E	L	L	R	Y	D	A	Q	G	R	R	L	D	D	V
Query Conservation
Alig confidence																							.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	Q	K	G	G	G	W	L	L	E	V	P	E	R	V	Y	T	P	E	D	F	.	D	E	S	V	K	E	I	A	R	T	T	R	T	F	V	E	R	E	V	L	P	L	L	E	R	M	E	H	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T	S	T	T	G	G	G	T	S			S					G	G	G		.																	T	T	T									T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.
Query SS confidence																																																											.	.	.
Query Sequence		R	F	H	P	A	W	H	L	L	M	Q	A	L	C	T	N	R	V	H	N	L	A	W	E	E	D	A	R	S	G	A	F	V	A	R	A	A	R	F	M	L	H	A	Q	V	E	A	G	S	L	C	P	I	T	M	T	F	.	.	.	A	A	T	P	L	L	L	Q	M	L	P	A	P	F	Q	D	W	T	T	P
Query Conservation																																																											.	.	.
Alig confidence		.																																																									.	.	.
Template Conservation		.
Template Sequence		.	E	L	E	L	N	V	P	L	M	R	K	A	G	E	L	G	L	L	A	I	D	V	P	E	E	Y	G	G	L	D	L	P	K	V	I	S	T	V	V	A	E	E	L	S	G	S	G	G	F	S	V	T	Y	G	A	H	T	S	I	G	T	L	P	L	V	Y	F	G	T	E	E	Q	K	R	K	Y	L	P	K
Template Known Secondary structure		.		G	G	G											T	T	T	T	S	T	T	S		G	G	G	T																	T	T	S		T										T	T	T	T														T	T
Template Predicted Secondary structure		.
Template SS confidence
			58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.															.
Query SS confidence																																																	.															.
Query Sequence		L	L	S	D	R	Y	D	S	H	L	L	P	G	G	Q	K	R	G	L	L	I	G	M	G	M	T	E	K	Q	G	G	S	D	V	M	S	N	T	T	R	A	E	R	L	E	D	G	.	S	Y	R	L	V	G	H	K	W	F	F	S	V	P	.	Q	S	D	A	H	L	V	L	A	Q	T	A	G	G	L	S	C
Query Conservation																																																	.															.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.																														.															.															.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.	.	.
Template Sequence		L	A	S	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	W	I	A	A	Y	C	L	T	E	P	G	S	G	S	D	A	L	A	A	K	T	R	A	T	L	S	E	D	G	K	H	Y	I	L	N	G	V	K	Q	W	I	S	N	A	G	F	A	H	L	F	T	V	F	A	K	V	D	G	E	.	.	.
Template Known Secondary structure					T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	S								B	T	T	B	S	S	S	G	G	G									T	T	S	S													T	T	T	T		S									T	T	T	.	.	.
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.	.	.
Template SS confidence
		137	.	.	140	.														.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.				280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																												.	.	.
Query SS confidence																																												.	.	.
Query Sequence		F	F	V	P	R	F	L	P	D	G	Q	R	N	A	I	R	L	E	R	L	K	D	K	L	G	N	R	S	N	A	S	C	E	V	E	F	Q	D	A	I	G	W	.	.	.	L	L	G	L	E	G	E	G	I	R	L	I	L	K	M	G	G	M	T	R	F	D	C	A	L	G	S	H	A	M	M	R	R	A	F
Query Conservation																																												.	.	.
Alig confidence		.																																										.	.	.
Template Conservation		.
Template Sequence		.	H	F	T	A	F	L	V	E	R	D	T	P	G	L	S	F	G	P	E	E	K	K	M	G	I	K	A	S	S	T	R	Q	V	I	L	E	D	V	K	V	P	V	E	N	V	L	G	E	I	G	K	G	H	K	I	A	F	N	V	L	N	V	G	R	Y	K	L	G	A	G	A	V	G	G	A	K	R	A	L
Template Known Secondary structure		.									T	T		T	T										S	S		T	T	S														G	G	G			S		T	T		T
Template Predicted Secondary structure		.
Template SS confidence
			201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.									.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.
Query Sequence		S	L	A	I	Y	H	A	H	Q	R	H	V	F	G	N	P	L	I	Q	Q	P	L	M	R	H	V	L	S	R	M	A	L	Q	L	E	G	Q	T	A	L	L	F	R	L	A	R	A	W	D	R	R	A	D	A	K	E	A	.	.	.	.	.	.	.	.	L	W	A	R	L	F	T	P	A	A	K	F	V	I	C
Query Conservation																																																											.	.	.	.	.	.	.	.
Alig confidence																																																											.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	L	S	A	Q	Y	A	T	Q	R	V	Q	F	G	R	P	I	G	R	F	G	L	I	Q	Q	K	L	G	E	M	A	S	R	I	Y	A	A	E	S	A	V	Y	R	T	V	G	L	I	D	E	A	L	L	G	K	K	G	P	E	A	V	M	A	G	I	E	E	Y	A	V	E	A	S	I	I	K	V	L	G	S
Template Known Secondary structure												B		S	S	S	B	G	G	G	S																																	T	T			S										T	T
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	G	M	P	F	V	A	E	A	M	E	V	L	G	G	I	G	Y	C	E	E	S	E	L	P	R	L	Y	R	E	M	P	V	N	S	I	W	E	G	S	G	N	I	M	C	L	D	V	L	R	V	L	N	K	Q	A	G	V	Y	D	L	L	S	E	A	F	V	E	V	K	G	Q	D	R	Y	F	D	R	A
Query Conservation
Alig confidence																																																																									.	.	.
Template Conservation																																																																									.	.	.
Template Sequence		E	V	L	D	Y	V	V	D	E	G	V	Q	I	H	G	G	Y	G	Y	S	Q	E	Y	P	I	E	R	A	Y	R	D	A	R	I	N	R	I	F	E	G	T	N	E	I	N	R	L	L	I	P	G	M	L	L	R	R	E	D	L	E	L	H	Q	V	Q	N	L	K	K	L	A	.	.	.	L	M	V	A	G	L
Template Known Secondary structure																G	G	G	G	G	S	T	T	S										G	G	G	G	T	T	T	S									T	T	G	G	G	S																		.	.	.
Template Predicted Secondary structure																																																																									.	.	.
Template SS confidence
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430				.	.	.	.	.	.
		467	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	R	L	Q	Q	Q	L	R	K	P	A	E	E	L	G	R	E	I	T	H	Q	L	F	L	L	G	C	G	A	Q	M	L	K	Y	A	S	P	P	M	A	Q	A	W	C	Q	V	M	L	D	T	R	G	G	V	R	L	S	E	Q	I	Q	N	D	L	L	L	R	A	T	G	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	V	Q	K	Y	G	Q	G	V	E	E	E	Q	E	V	L	G	A	V	A	D	I	L	I	D	A	Y	A	A	E	S	A	L	L	R	A	R	R	L	G	G	L	A	P	V	L	A	R	I	Y	L	A	Q	A	L	D	R	A	Q	A	G	A	L	S	V	L	P	R	L	V	E	G
Template Known Secondary structure							G	G	G	G	G	G																														T	T																								G	G	G	T			T
Template Predicted Secondary structure
Template SS confidence
		464	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.