Job Description P33224 Confidence 100.00% Date Thu Jan 5 11:51:23 GMT 2012 Rank 24 Aligned Residues 327 % Identity 25% Template c2vigC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:short-chain specific acyl-coa dehydrogenase,; PDBTitle: crystal structure of human short-chain acyl coa2 dehydrogenase Resolution 1.9 Å

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		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140			.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																									.	.																														.	.
Query SS confidence																									.	.																														.	.
Query Sequence		H	L	L	M	Q	A	L	C	T	N	R	V	H	N	L	A	W	E	E	D	A	R	S	.	.	G	A	F	V	A	R	A	A	R	F	M	L	H	A	Q	V	E	A	G	S	L	C	P	I	T	M	T	F	A	.	.	A	T	P	L	L	L	Q	M	L	P	A	P	F	Q	D	W	T	T	P	L	L	S	D	R
Query Conservation																									.	.																														.	.
Alig confidence																									.	.																														.	.
Template Conservation
Template Sequence		A	A	Q	V	K	K	M	G	G	L	G	L	L	A	M	D	V	P	E	E	L	G	G	A	G	L	D	Y	L	A	Y	A	I	A	M	E	E	I	S	R	G	C	A	S	T	G	V	I	M	S	V	N	N	S	L	Y	L	G	P	I	L	K	F	G	S	K	E	Q	K	Q	A	W	V	T	P	F	T	S	G	D
Template Known Secondary structure												T	T	T	S	T	T	S		G	G	G	T	S																																T	T																	T	G	G	G	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																																																										.
Query SS confidence																																																										.
Query Sequence		Y	D	S	H	L	L	P	G	G	Q	K	R	G	L	L	I	G	M	G	M	T	E	K	Q	G	G	S	D	V	M	S	N	T	T	R	A	E	R	L	E	D	G	S	Y	R	L	V	G	H	K	W	F	F	S	V	P	.	Q	S	D	A	H	L	V	L	A	Q	T	A	G	G	L	S	C	F	F	V	P	R	F
Query Conservation																																																										.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																														.														.														.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																														.																												.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	K	I	G	C	F	A	L	S	E	P	G	N	G	S	D	A	G	A	A	S	T	T	A	R	A	E	G	D	S	.	W	V	L	N	G	T	K	A	W	I	T	N	A	W	E	A	S	A	A	V	V	F	A	S	T	D	S	.	.	.	.	.	.	I	S	A	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	S								B	T	T	B	S	S	S	G	G	G									T	T		.												T	T	T	T		S											.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																														.																												.	.	.	.	.	.
Template SS confidence
															148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.							.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.				280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																																						.	.	.
Query SS confidence																																						.	.	.
Query Sequence		L	P	D	G	Q	R	N	A	I	R	L	E	R	L	K	D	K	L	G	N	R	S	N	A	S	C	E	V	E	F	Q	D	A	I	G	W	.	.	.	L	L	G	L	E	G	E	G	I	R	L	I	L	K	M	G	G	M	T	R	F	D	C	A	L	G	S	H	A	M	M	R	R	A	F	S	L	A	I	Y	H
Query Conservation																																						.	.	.
Alig confidence																																						.	.	.
Template Conservation
Template Sequence		L	V	P	M	P	T	P	G	L	T	L	G	K	K	E	D	K	L	G	I	R	G	S	S	T	A	N	L	I	F	E	D	C	R	I	P	K	D	S	I	L	G	E	P	G	M	G	F	K	I	A	M	Q	T	L	D	M	G	R	I	G	I	A	S	Q	A	L	G	I	A	Q	T	A	L	D	C	A	V	N	Y
Template Known Secondary structure					S	S		T	T										S	S		T	T	S														G	G	G			S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	Q	R	H	V	F	G	N	P	L	I	Q	Q	P	L	M	R	H	V	L	S	R	M	A	L	Q	L	E	G	Q	T	A	L	L	F	R	L	A	R	A	W	D	R	R	A	D	A	K	E	A	L	W	A	R	L	F	T	P	A	A	K	F	V	I	C	K	R	G	M	P	F	V	A	E	A	M	E	V	L
Query Conservation
Alig confidence																																																			.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.
Template Sequence		A	E	N	R	M	A	F	G	A	P	L	T	K	L	Q	V	I	Q	F	K	L	A	D	M	A	L	A	L	E	S	A	R	L	L	T	W	R	A	A	M	L	K	D	N	K	K	P	F	I	.	.	.	.	.	.	K	E	A	A	M	A	K	L	A	A	S	E	A	A	T	A	I	S	H	Q	A	I	Q	I	L
Template Known Secondary structure								T	T			G	G	G	S																														T	T					.	.	.	.	.	.
Template Predicted Secondary structure																																																			.	.	.	.	.	.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.							.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	I	G	Y	C	E	E	S	E	L	P	R	L	Y	R	E	M	P	V	N	S	I	W	E	G	S	G	N	I	M	C	L	D	V	L	R	V	L	N	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	G	M	G	Y	V	T	E	M	P	A	E	R	H	Y	R	D	A	R	I	T	E	I	Y	E	G	T	S	E	I	Q	R	L	V	I	A	G	H	L	L	R
Template Known Secondary structure		G	G	G	G	G	S	T	T	S	S									G	G	G	G	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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