Job Description P33224 Confidence 100.00% Date Thu Jan 5 11:51:23 GMT 2012 Rank 4 Aligned Residues 469 % Identity 20% Template c2uxwA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:very-long-chain specific acyl-coa dehydrogenase; PDBTitle: crystal structure of human very long chain acyl-coa2 dehydrogenase (acadvl) Resolution 1.45 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	W	Q	T	H	T	V	F	N	Q	P	I	P	L	N	N	S	N	L	Y	L	S	D	G	A	L	C	E	A	V	T	R	E	G	A	G	W	D	S	D	F	L	A	S	I	G	Q	Q	L	G	T	A	E	S	L	E	L	G	R	L	A	N	V	N	P	P	E	L	L	R	Y	D	A	Q	G	R	R	L	D	D
Query Conservation
Alig confidence																		.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	L	T	T	D	Q	V	F	P	Y	P	S	V	L	N	E	.	E	Q	T	Q	F	L	K	E	L	V	E	P	V	S	R	F	F	E	E	V	N	D	P	A	K	N	D	A	L	E	M	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						T	T	T	S	S								.																				T										T	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.					140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.
Query SS confidence																																																												.	.	.	.
Query Sequence		V	R	F	H	P	A	W	H	L	L	M	Q	A	L	C	T	N	R	V	H	N	L	A	W	E	E	D	A	R	S	G	A	F	V	A	R	A	A	R	F	M	L	H	A	Q	V	E	A	G	S	L	C	P	I	T	M	T	F	.	.	.	.	A	A	T	P	L	L	L	Q	M	L	P	A	P	F	Q	D	W	T
Query Conservation																																																												.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																																				.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	E	T	T	W	Q	G	L	K	E	L	G	A	F	G	L	Q	V	P	S	E	L	G	G	V	G	L	C	N	T	Q	Y	A	R	L	V	E	I	V	G	M	H	D	L	G	V	G	I	T	L	G	A	H	Q	S	I	G	F	K	G	I	L	L	F	G	T	K	A	Q	K	E	K	Y	L
Template Known Secondary structure		.	.	.	.	.	.	.										T	T	T	T		T	T	S		G	G	G	T	S																															T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																																																				.														.														.	.
Query SS confidence																																																				.														.														.	.
Query Sequence		T	P	L	L	S	D	R	Y	D	S	H	L	L	P	G	G	Q	K	R	G	L	L	I	G	M	G	M	T	E	K	Q	G	G	S	D	V	M	S	N	T	T	R	A	E	R	L	E	D	G	S	.	Y	R	L	V	G	H	K	W	F	F	S	V	P	.	Q	S	D	A	H	L	V	L	A	Q	T	A	G	.	.
Query Conservation																																																				.														.														.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.																															.														.														.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	K	L	A	S	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	A	A	F	C	L	T	E	P	S	S	G	S	D	A	A	S	I	R	T	S	A	V	P	S	P	C	G	K	Y	Y	T	L	N	G	S	K	L	W	I	S	N	G	G	L	A	D	I	F	T	V	F	A	K	T	P	V	T	D
Template Known Secondary structure						T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	S								B	T	T	B	S	S		G	G	G									T	T	S	S													T	T	T	T		S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		203	.	.	.	.	.	.														210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
					234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.				280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																																															.	.	.
Query SS confidence		.	.	.																																															.	.	.
Query Sequence		.	.	.	G	L	S	C	F	F	V	P	R	F	L	P	D	G	Q	R	N	A	I	R	L	E	R	L	K	D	K	L	G	N	R	S	N	A	S	C	E	V	E	F	Q	D	A	I	G	W	.	.	.	L	L	G	L	E	G	E	G	I	R	L	I	L	K	M	G	G	M	T	R	F	D	C	A	L	G	S	H
Query Conservation		.	.	.																																															.	.	.
Alig confidence		.	.	.																																															.	.	.
Template Conservation
Template Sequence		P	A	T	G	A	V	K	E	K	I	T	A	F	V	V	E	R	G	F	G	G	I	T	H	G	P	P	E	K	K	M	G	I	K	A	S	N	T	A	E	V	F	F	D	G	V	R	V	P	S	E	N	V	L	G	E	V	G	S	G	F	K	V	A	M	H	I	L	N	N	G	R	F	G	M	A	A	A	L	A
Template Known Secondary structure		T	T	T														G	G	G	S	S										S	S		T	T	S														G	G	G			S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	M	R	R	A	F	S	L	A	I	Y	H	A	H	Q	R	H	V	F	G	N	P	L	I	Q	Q	P	L	M	R	H	V	L	S	R	M	A	L	Q	L	E	G	Q	T	A	L	L	F	R	L	A	R	A	W	D	R	R	A	D	A	K	E	A	L	W	A	R	L	F	T	P	A	A	K	F	V	I	C	K
Query Conservation
Alig confidence																																																															.	.	.	.	.
Template Conservation																																																															.	.	.	.	.
Template Sequence		G	T	M	R	G	I	I	A	K	A	V	D	H	A	T	N	R	T	Q	F	G	E	K	I	H	N	F	G	L	I	Q	E	K	L	A	R	M	V	M	L	Q	Y	V	T	E	S	M	A	Y	M	V	S	A	N	M	D	Q	G	A	T	D	.	.	.	.	.	F	Q	I	E	A	A	I	S	K	I	F	G	S	E
Template Known Secondary structure																					T	T			G	G	G	S																														T	T		S		.	.	.	.	.
Template Predicted Secondary structure																																																															.	.	.	.	.
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410						.	.	.	.	.	.	.	.	.	420	.	.	.	.
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	M	P	F	V	A	E	A	M	E	V	L	G	G	I	G	Y	C	E	E	S	E	L	P	R	L	Y	R	E	M	P	V	N	S	I	W	E	G	S	G	N	I	M	C	L	D	V	L	R	V	L	N	K	Q	A	G	V	Y	D	L	L	S	E	A	F	V	E	V	K	G	Q	D	R	Y	F	D	R	A	V
Query Conservation
Alig confidence																																																											.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.
Template Sequence		A	A	W	K	V	T	D	E	C	I	Q	I	M	G	G	M	G	F	M	K	E	P	G	V	E	R	V	L	R	D	L	R	I	F	R	I	F	E	G	T	N	D	I	L	R	L	F	V	A	L	Q	G	C	M	D	K	G	.	.	.	.	.	.	K	E	L	S	G	L	G	S	A	L	K	N	P	F	G	S	G
Template Known Secondary structure															T					S	S	T	T	S									G	G	G	G	T	S	S	S																			.	.	.	.	.	.					G	G	G		S				T	T
Template Predicted Secondary structure																																																											.	.	.	.	.	.
Template SS confidence
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.							.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
		468	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.			.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
Predicted Secondary structure																																.	.
Query SS confidence																																.	.
Query Sequence		R	R	L	Q	Q	Q	L	R	K	P	A	E	E	L	G	R	E	I	T	H	Q	L	F	L	L	G	C	G	A	Q	.	.	M	L	K	Y	A	S	P	P	M	A	Q	A	W	C	Q	V	M	L	D	T	R	G	G	V	R	L	S	E	Q	I	Q	N	D	L	L	L	R	A
Query Conservation																																.	.
Alig confidence																																.	.																							.	.	.
Template Conservation																																																								.	.	.
Template Sequence		L	S	L	S	G	L	V	H	P	E	L	S	R	S	G	E	L	A	V	R	A	L	E	Q	F	A	T	V	V	E	A	K	L	I	K	H	K	K	G	I	V	N	E	Q	F	L	L	Q	R	L	A	D	G	A	.	.	.	I	D	L	Y	A	M	V	V	V	L	S	R	A
Template Known Secondary structure					B	T	T	B		G	G	G																										G	G	G	G	G	G													.	.	.
Template Predicted Secondary structure																																																								.	.	.
Template SS confidence
		519	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.				.	.	.	.	.	.	.	580	.	.	.	.	.