Job Description P33224 Confidence 100.00% Date Thu Jan 5 11:51:23 GMT 2012 Rank 30 Aligned Residues 390 % Identity 15% Template c2rehD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:nitroalkane oxidase; PDBTitle: mechanistic and structural analyses of the roles of arg4092 and asp402 in the reaction of the flavoprotein nitroalkane3 oxidase Resolution 2.40 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	N	L	Y	L	S	D	G	A	L	C	E	A	V	T	R	E	G	A	G	W	D	S	D	F	L	A	S	I	G	Q	Q	L	G	T	A	E	S	L	E	L	G	R	L	A	N	V	N	P	P	E	L	L	R	Y	D	A	Q	G	R	R	L	D	D	V	R	F	H	P	A	W	H	L	L	M	Q	A	L	C
Query Conservation
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	F	K	L	S	P	S	Q	L	E	A	R	R	H	A	Q	A	F	A	N	T	V	L	T	K	A	S	A	E	Y	S	T	Q	K	D	Q	L	S	R	F	Q	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	F	Y	R	E	A	V
Template Known Secondary structure																							T	G	G	G						T	T			S								T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.																														.	.	.	.	50	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.			.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																		.	.																																			.
Query SS confidence																		.	.																																			.
Query Sequence		T	N	R	V	H	N	L	A	W	E	E	D	A	R	S	G	.	.	A	F	V	A	R	A	A	R	F	M	L	H	A	Q	V	E	A	G	S	L	C	P	I	T	M	T	F	A	A	T	P	L	L	L	.	Q	M	L	P	A	P	F	Q	D	W	T	T	P	L	L	S	D	R	Y	D	S	H	L	L	P	G	G
Query Conservation																		.	.																																			.
Alig confidence																		.	.																																			.																			.	.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.	.
Template Sequence		R	H	G	L	I	K	A	Q	V	P	I	P	L	G	G	T	M	E	S	L	V	H	E	S	I	I	L	E	E	L	F	A	V	E	P	A	T	S	I	T	I	V	A	T	A	L	G	L	M	P	V	I	L	C	D	S	P	S	L	Q	E	K	F	L	K	P	F	I	S	G	E	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T	T	T	G	G	G	S	B	G	G	G	T			B															T	T			T	T																	S	S										G	G	G	S	S	S		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.						.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.						.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																								.	.	.	.	.																										.			.	.	.	.	.												.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.																										.			.	.	.	.	.												.	.	.	.	.	.	.	.	.
Query Sequence		Q	K	R	G	L	L	I	G	M	G	M	T	E	K	Q	G	G	S	D	V	M	S	.	.	.	.	.	N	T	T	R	A	E	R	L	E	D	G	S	Y	R	L	V	G	H	K	W	F	F	S	V	P	.	Q	S	.	.	.	.	.	D	A	H	L	V	L	A	Q	T	A	G	.	.	.	.	.	.	.	.	.
Query Conservation																								.	.	.	.	.																										.			.	.	.	.	.												.	.	.	.	.	.	.	.	.
Alig confidence		.	.																					.	.	.	.	.												.														.			.	.	.	.	.												.	.	.	.	.	.	.	.	.
Template Conservation		.	.																																					.
Template Sequence		.	.	G	E	P	L	A	S	L	M	H	S	E	P	N	G	T	A	N	W	L	Q	K	G	G	P	G	L	Q	T	T	A	R	K	V	G	N	E	.	W	V	I	S	G	E	K	L	W	P	S	N	S	G	G	W	D	Y	K	G	A	D	L	A	C	V	V	C	R	V	S	D	D	P	S	K	P	Q	D	P	N
Template Known Secondary structure		.	.	S											T	T		S	T	T	T	T		T	T	S				S							T	T		.											T	T	T	T	T	T	T	T	S			S										S	S	T	T	S				T	T
Template Predicted Secondary structure		.	.																																					.
Template SS confidence
				125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.							.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.				280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.																													.	.	.											.
Query SS confidence																				.	.	.	.	.	.																													.	.	.											.
Query Sequence		G	L	S	C	F	F	V	P	R	F	L	P	D	G	Q	R	N	A	.	.	.	.	.	.	I	R	L	E	R	L	K	D	K	L	G	N	R	S	N	A	S	C	E	V	E	F	Q	D	A	I	G	W	.	.	.	L	L	G	L	E	G	E	G	I	R	.	L	I	L	K	M	G	G	M	T	R	F	D	C	A
Query Conservation																				.	.	.	.	.	.																													.	.	.											.
Alig confidence																				.	.	.	.	.	.																													.	.	.											.
Template Conservation
Template Sequence		V	D	P	A	T	Q	I	A	V	L	L	V	T	R	E	T	I	A	N	N	K	K	D	A	Y	Q	I	L	G	E	P	E	L	A	G	H	I	T	T	S	G	P	H	T	R	F	T	E	F	H	V	P	H	E	N	L	L	C	T	P	G	L	K	A	Q	G	L	V	E	T	A	F	A	M	S	A	A	L	V	G
Template Known Secondary structure		S		G	G	G	G													T	S		G	G	G										S	S		T	T															G	G	G	B		S		T	T
Template Predicted Secondary structure
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.		.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		L	G	S	H	A	M	M	R	R	A	F	S	L	A	I	Y	H	A	H	Q	R	H	V	F	G	.	N	P	L	I	Q	Q	P	L	M	R	H	V	L	S	R	M	A	L	Q	L	E	G	Q	T	A	L	L	F	R	L	A	R	A	W	D	R	R	A	D	A	K	E	A	L	W	A	R	L	F	T	P	A	A	K
Query Conservation																											.
Alig confidence																											.																																												.	.
Template Conservation																																																																							.	.
Template Sequence		A	M	A	I	G	T	A	R	A	A	F	E	E	A	L	V	F	A	K	S	D	T	R	G	G	S	K	H	I	I	E	H	Q	S	V	A	D	K	L	I	D	C	K	I	R	L	E	T	S	R	L	L	V	W	K	A	V	T	T	L	E	D	E	A	L	E	W	K	V	.	.	K	L	E	M	A	M	Q	T	K
Template Known Secondary structure																								T	T	S	S	S		G	G	G	S																													T		T	T	S					.	.
Template Predicted Secondary structure																																																																							.	.
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350			.	.	.	.	.	.	.	.	.
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	I	C	K	R	G	M	P	F	V	A	E	A	M	E	V	L	G	G	I	G	Y	C	E	E	S	E	L	P	R	L	Y	R	E	M	P	V	N	S	I	W	E	G	S	G	N	I	M	C	L	D	V	L	R	V	L	N	K	Q	A	G	V	Y	D	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	Y	T	T	D	V	A	V	E	C	V	I	D	A	M	K	A	V	G	M	K	S	Y	A	K	D	M	S	F	P	R	L	L	N	E	V	M	C	Y	P	L	F	E	G	G	N	I	G	L	R	R	R	Q	M	Q	R	V	M	A	L	E	D	Y	E	P	W	A
Template Known Secondary structure																					G	G	G	G	S	T	T	S	S									T	T	T	T	T	S	S	S		T	T	T	T											S	T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.