Job Description P33224 Confidence 100.00% Date Thu Jan 5 11:51:23 GMT 2012 Rank 11 Aligned Residues 336 % Identity 20% Template c2a1tC_ PDB info PDB header:oxidoreductase/electron transport Chain: C: PDB Molecule:acyl-coa dehydrogenase, medium-chain specific, PDBTitle: structure of the human mcad:etf e165betaa complex Resolution 2.80 Å

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		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.				.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.
Query SS confidence																																																				.	.	.
Query Sequence		H	L	L	M	Q	A	L	C	T	N	R	V	H	N	L	A	W	E	E	D	A	R	S	G	A	F	V	A	R	A	A	R	F	M	L	H	A	Q	V	E	A	G	S	L	C	P	I	T	M	T	.	.	.	F	A	A	T	P	L	L	L	Q	M	L	P	A	P	F	Q	D	W	T	T	P	L	L	S	D	R	Y
Query Conservation																																																				.	.	.
Alig confidence																																																				.	.	.																											.
Template Conservation																																																																																	.
Template Sequence		V	P	L	I	R	R	A	W	E	L	G	L	M	N	T	H	I	P	E	N	C	G	G	L	G	L	G	T	F	D	A	C	L	I	S	E	E	L	A	Y	G	C	T	G	V	Q	T	A	I	E	G	N	S	L	G	Q	M	P	I	I	I	A	G	N	D	Q	Q	K	K	K	Y	L	G	R	M	T	E	E	P	.
Template Known Secondary structure											T	T		S	S	T	T	S		G	G	G	T	S																																																							S		.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.				240	.
Predicted Secondary structure																																																									.																				.	.	.
Query SS confidence																																																									.																				.	.	.
Query Sequence		D	S	H	L	L	P	G	G	Q	K	R	G	L	L	I	G	M	G	M	T	E	K	Q	G	G	S	D	V	M	S	N	T	T	R	A	E	R	L	E	D	G	S	Y	R	L	V	G	H	K	W	F	F	S	V	P	.	Q	S	D	A	H	L	V	L	A	Q	T	A	G	G	L	S	C	F	F	.	.	.	V	P
Query Conservation																																																									.																				.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																														.														.																				.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	L	M	C	A	Y	C	V	T	E	P	G	A	G	S	D	V	A	G	I	K	T	K	A	E	K	K	G	D	E	.	Y	I	I	N	G	Q	K	M	W	I	T	N	G	G	K	A	N	W	Y	F	L	L	A	R	S	D	P	D	P	K	A	P	A	N	K	A	F	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.									B	T	T	B	S	S		G	G	G									S	S		.												T	T	T	S														T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																														.
Template SS confidence
														129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.		.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.				280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.
Query SS confidence																																								.	.	.
Query Sequence		R	F	L	P	D	G	Q	R	N	A	I	R	L	E	R	L	K	D	K	L	G	N	R	S	N	A	S	C	E	V	E	F	Q	D	A	I	G	W	.	.	.	L	L	G	L	E	G	E	G	I	R	L	I	L	K	M	G	G	M	T	R	F	D	C	A	L	G	S	H	A	M	M	R	R	A	F	S	L	A	I
Query Conservation																																								.	.	.
Alig confidence																																								.	.	.
Template Conservation
Template Sequence		G	F	I	V	E	A	D	T	P	G	I	Q	I	G	R	K	E	L	N	M	G	Q	R	C	S	D	T	R	G	I	V	F	E	D	V	K	V	P	K	E	N	V	L	I	G	D	G	A	G	F	K	V	A	M	G	A	F	D	K	T	R	P	V	V	A	A	G	A	V	G	L	A	Q	R	A	L	D	E	A	T
Template Known Secondary structure							T	T	S	T	T										S	S		T	T	S														G	G	G	B	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	H	A	H	Q	R	H	V	F	G	N	P	L	I	Q	Q	P	L	M	R	H	V	L	S	R	M	A	L	Q	L	E	G	Q	T	A	L	L	F	R	L	A	R	A	W	D	R	R	A	D	A	K	E	A	L	W	A	R	L	F	T	P	A	A	K	F	V	I	C	K	R	G	M	P	F	V	A	E	A	M	E
Query Conservation
Alig confidence																																																					.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.
Template Sequence		K	Y	A	L	E	R	K	T	F	G	K	L	L	V	E	H	Q	A	I	S	F	M	L	A	E	M	A	M	K	V	E	L	A	R	M	S	Y	Q	R	A	A	W	E	V	D	S	G	R	R	N	T	.	.	.	.	.	.	Y	Y	A	S	I	A	K	A	F	A	G	D	I	A	N	Q	L	A	T	D	A	V	Q
Template Known Secondary structure					T	T				T	T			G	G	G	S																														T	T					.	.	.	.	.	.
Template Predicted Secondary structure																																																					.	.	.	.	.	.
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.							.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	G	G	I	G	Y	C	E	E	S	E	L	P	R	L	Y	R	E	M	P	V	N	S	I	W	E	G	S	G	N	I	M	C	L	D	V	L	R	V	L	N	K	Q	A	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	G	G	N	G	F	N	T	E	Y	P	V	E	K	L	M	R	D	A	K	I	Y	Q	I	Y	E	G	T	S	Q	I	Q	R	L	I	V	A	R	E	H	I	D	K	Y	K
Template Known Secondary structure			T					T	S	T	T	S	S									G	G	G	G	T	S	S	S																T	T
Template Predicted Secondary structure
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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