Job Description P33224 Confidence 99.97% Date Thu Jan 5 11:51:23 GMT 2012 Rank 42 Aligned Residues 316 % Identity 16% Template c1u8vA_ PDB info PDB header:lyase, isomerase Chain: A: PDB Molecule:gamma-aminobutyrate metabolism PDBTitle: crystal structure of 4-hydroxybutyryl-coa dehydratase from2 clostridium aminobutyricum: radical catalysis involving a3 [4fe-4s] cluster and flavin Resolution 1.60 Å

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		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.																						.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	G	R	R	L	D	D	V	R	F	H	P	A	W	H	L	L	M	Q	A	L	C	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	R	V	H	N	L	A	W	E	E	D	A	R	S	G	A	F	V	A	R	A	A	R	F	M	L	H	A	Q	V	E	A	G	S	L	C
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	G	E	K	I	E	N	W	V	D	H	P	M	I	R	P	S	I	N	C	V	R	M	T	Y	E	L	A	Q	D	P	Q	Y	A	D	L	M	T	T	K	S	N	L	I	G	K	T	I	N	R	F	A	N	L	H	Q	S	T	D	D	L	R	K	K	V	K	M	Q	R	L	L	G	Q	K	T	A	S	C	F	Q
Template Known Secondary structure		T	T				S	S	G	G	G		T	T	T																	T	T	T									T	T	T	S	S				G	G	G					S																			S	S
Template Predicted Secondary structure
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.			.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190									.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																															.	.																													.	.	.	.	.	.	.	.
Query SS confidence																															.	.																													.	.	.	.	.	.	.	.
Query Sequence		P	I	T	M	T	F	A	A	T	P	L	L	L	Q	M	L	P	A	P	F	Q	D	W	T	T	P	L	L	S	.	.	D	R	Y	D	S	H	L	L	P	G	G	Q	K	R	G	L	L	I	G	M	G	M	T	E	K	Q	G	G	.	.	.	.	.	.	.	.	S	D	V	M	S	N	T	T	R	A	E	R	L
Query Conservation																															.	.																													.	.	.	.	.	.	.	.
Alig confidence							.																								.	.												.	.	.	.														.	.	.	.	.	.	.	.
Template Conservation							.																																					.	.	.	.
Template Sequence		R	C	V	G	M	.	D	A	F	N	A	V	F	S	T	T	Y	E	I	D	Q	K	Y	G	T	N	Y	H	K	N	F	T	E	Y	L	K	Y	I	Q	E	N	D	.	.	.	.	L	I	V	D	G	A	M	T	D	P	K	G	D	R	G	L	A	P	S	A	Q	K	D	P	D	L	F	L	R	I	V	E	K	R
Template Known Secondary structure		T					.																																				T	.	.	.	.												S		T	T	S		G	G	G		S	S	T	T	S	S
Template Predicted Secondary structure							.																																					.	.	.	.
Template SS confidence
		102	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.					.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.																.	.
Predicted Secondary structure																				.												.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.												.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	D	G	S	Y	R	L	V	G	H	K	W	F	F	S	V	P	Q	.	S	D	A	H	L	V	L	A	Q	T	A	.	G	G	L	S	C	F	F	V	P	R	F	L	P	D	G	Q	R	N	A	I	R	L	E	R	L	K	D	K	L	G	N	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	N
Query Conservation																				.												.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.															.												.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.
Template Sequence		E	D	G	.	I	V	V	R	G	A	K	A	H	Q	T	G	S	I	N	S	H	E	H	I	I	M	P	T	I	A	M	T	E	A	D	K	D	Y	A	V	S	F	A	C	P	S	D	A	D	G	L	F	M	I	Y	G	R	Q	S	C	D	T	R	K	M	E	E	G	A	D	I	D	L	G	N	K	Q	F	G	G
Template Known Secondary structure		S	S		.									S		T	T		T	T		S							S	S				G	G	G	G	G	G								T	T		T	T									T	T	G	G	G	G	G	S	T	T			G	G	G	S	S	S	S
Template Predicted Secondary structure					.
Template SS confidence
		177	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.						280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure															.	.	.	.	.
Query SS confidence															.	.	.	.	.
Query Sequence		A	S	C	E	V	E	F	Q	D	A	I	G	W	.	.	.	.	.	L	L	G	L	E	G	E	G	I	R	L	I	L	K	M	G	G	M	T	R	F	D	C	A	L	G	S	H	A	M	M	R	R	A	F	S	L	A	I	Y	H	A	H	Q	R	H	V	F	G	N	P	L	I	Q	Q	P	L	M	R	H	V	L
Query Conservation															.	.	.	.	.
Alig confidence															.	.	.	.	.																																															.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.
Template Sequence		Q	E	A	L	V	V	F	D	N	V	F	I	P	N	D	R	I	F	L	C	Q	E	Y	D	F	A	G	M	M	V	E	R	F	A	G	Y	H	R	Q	S	Y	G	G	C	K	V	G	V	G	D	V	V	I	G	A	A	A	L	A	A	D	Y	N	G	.	.	.	.	.	A	Q	K	A	S	H	V	K	D	K	L
Template Known Secondary structure															G	G	G					S		G	G	G																																							T	.	.	.	.	.		T	T
Template Predicted Secondary structure																																																																		.	.	.	.	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.						320	.	.	.	.	.	.	.	.	.	330
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	M	A	L	Q	L	E	G	Q	T	A	L	L	F	R	L	A	R	A	W	D	R	R	A	D	A	K	E	A	L	W	A	R	L	F	T	P	A	A	K	F	V	I	C	K	R	G	M	P	F	V	A	E	A	M	E	V	L	G	G
Query Conservation
Alig confidence																																	.
Template Conservation																																	.
Template Sequence		I	E	M	T	H	L	N	E	T	L	Y	C	C	G	I	A	C	S	A	E	G	Y	P	T	A	A	G	N	Y	Q	I	.	D	L	L	L	A	N	V	C	K	Q	N	I	T	R	F	P	Y	E	I	V	R	L	A	E	D	I	A	G	G
Template Known Secondary structure																					T					T	T	S					.													T	T															T
Template Predicted Secondary structure																																	.
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.		.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions