Job Description P33224 Confidence 100.00% Date Thu Jan 5 11:51:23 GMT 2012 Rank 23 Aligned Residues 372 % Identity 20% Template c1siqA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:glutaryl-coa dehydrogenase; PDBTitle: the crystal structure and mechanism of human glutaryl-coa2 dehydrogenase Resolution 2.10 Å

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		14	.	.	.	.	.	20			.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence		P	L	N	N	S	N	L	.	.	Y	L	S	D	G	A	L	C	E	A	V	T	R	E	G	A	G	W	D	S	D	F	L	A	S	I	G	Q	Q	L	G	T	A	E	S	L	E	L	G	R	L	A	N	V	N	P	P	E	L	L	R	Y	D	A	Q	G	R	R	L	D	D	V	R	F	H	P	A	W	H	L	L
Query Conservation									.	.
Alig confidence									.	.										.																					.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.																					.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	W	Q	D	P	L	V	L	E	E	Q	L	T	T	D	E	I	L	.	I	R	D	T	F	R	T	Y	C	Q	E	R	L	M	P	R	I	L	L	A	.	.	.	.	.	.	.	.	.	N	R	N	E	V	F	H	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	I
Template Known Secondary structure			T	T	S	T	T		G	G	G	G	S							.													T								.	.	.	.	.	.	.	.	.				T				T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																				.																					.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.										.	.	.	.	.	.	.	50																							.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.					140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.
Query SS confidence																																																		.	.	.	.
Query Sequence		M	Q	A	L	C	T	N	R	V	H	N	L	A	W	E	E	D	A	R	S	G	A	F	V	A	R	A	A	R	F	M	L	H	A	Q	V	E	A	G	S	L	C	P	I	T	M	T	F	.	.	.	.	A	A	T	P	L	L	L	Q	M	L	P	A	P	F	Q	D	W	T	T	P	L	L	S	D	R	Y	D	S
Query Conservation																																																		.	.	.	.
Alig confidence																	.																																	.	.	.	.																										.	.	.
Template Conservation																	.																																																														.	.	.
Template Sequence		I	S	E	M	G	E	L	G	V	L	G	P	T	I	K	.	G	Y	G	C	A	G	V	S	S	V	A	Y	G	L	L	A	R	E	L	E	R	V	D	S	G	Y	R	S	A	M	S	V	Q	S	S	L	V	M	H	P	I	Y	A	Y	G	S	E	E	Q	R	Q	K	Y	L	P	Q	L	A	K	G	E	.	.	.
Template Known Secondary structure								T	T		S	S	T	T			.		T	T																		T	T														T	T								S														T	T	S	.	.	.
Template Predicted Secondary structure																	.																																																														.	.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																																										.														.
Query SS confidence																																										.														.
Query Sequence		H	L	L	P	G	G	Q	K	R	G	L	L	I	G	M	G	M	T	E	K	Q	G	G	S	D	V	M	S	N	T	T	R	A	E	R	L	E	D	G	S	.	Y	R	L	V	G	H	K	W	F	F	S	V	P	.	Q	S	D	A	H	L	V	L	A	Q	T	A	G	G	L	S	C	F	F	V	P	R	F	L	P
Query Conservation																																										.														.
Alig confidence		.	.	.	.	.	.	.	.	.	.																															.														.															.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.																																																												.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	L	L	G	C	F	G	L	T	E	P	N	S	G	S	D	P	S	S	M	E	T	R	A	H	Y	N	S	S	N	K	S	Y	T	L	N	G	T	K	T	W	I	T	N	S	P	M	A	D	L	F	V	V	W	A	R	C	E	D	G	.	.	.	.	C	I	R	G	F	L	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	S								B	T	T	B	S	S		G	G	G									T	T	T	T													T	G	G	G		S									T	T	S	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																																												.	.	.	.
Template SS confidence
												129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.					.	.	190	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.			280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure																																				.	.
Query SS confidence																																				.	.
Query Sequence		D	G	Q	R	N	A	I	R	L	E	R	L	K	D	K	L	G	N	R	S	N	A	S	C	E	V	E	F	Q	D	A	I	G	W	.	.	L	L	G	L	E	G	E	G	I	R	L	I	L	K	M	G	G	M	T	R	F	D	C	A	L	G	S	H	A	M	M	R	R	A	F	S	L	A	I	Y	H	A	H	Q
Query Conservation																																				.	.
Alig confidence																																				.	.
Template Conservation
Template Sequence		E	K	G	M	R	G	L	S	A	P	R	I	Q	G	K	F	S	L	R	A	S	A	T	G	M	I	I	M	D	G	V	E	V	P	E	E	N	V	L	P	G	A	S	S	L	G	G	P	F	G	C	L	N	N	A	R	Y	G	I	A	W	G	V	L	G	A	S	E	F	C	L	H	T	A	R	Q	Y	A	L	D
Template Known Secondary structure			T	T		T	T					B					S	S	S	T	T	S														G	G	G	B		T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	H	V	F	G	N	P	L	I	Q	Q	P	L	M	R	H	V	L	S	R	M	A	L	Q	L	E	G	Q	T	A	L	L	F	R	L	A	R	A	W	D	R	R	A	D	A	K	E	A	L	W	A	R	L	F	T	P	A	A	K	F	V	I	C	K	R	G	M	P	F	V	A	E	A	M	E	V	L	G	G	I
Query Conservation
Alig confidence																																																.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.
Template Sequence		R	M	Q	F	G	V	P	L	A	R	N	Q	L	I	Q	K	K	L	A	D	M	L	T	E	I	T	L	G	L	H	A	C	L	Q	L	G	R	L	K	D	Q	D	K	A	A	P	.	.	.	.	.	.	E	M	V	S	L	L	K	R	N	N	C	G	K	A	L	D	I	A	R	Q	A	R	D	M	L	G	G	N
Template Known Secondary structure					T	T			G	G	G	S																														T	T					.	.	.	.	.	.																									T	G	G	G
Template Predicted Secondary structure																																																.	.	.	.	.	.
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320							.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	C	E	E	S	E	L	P	R	L	Y	R	E	M	P	V	N	S	I	W	E	G	S	G	N	I	M	C	L	D	V	L	R	V	L	N	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I	S	D	E	Y	H	V	I	R	H	A	M	N	L	E	A	V	N	T	Y	E	G	T	H	D	I	H	A	L	I	L	G	R	A	I	T	G
Template Known Secondary structure		G	G	S	G	G	G	S												T	T	S	S	S															S
Template Predicted Secondary structure
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.