Job Description P33224 Confidence 100.00% Date Thu Jan 5 11:51:23 GMT 2012 Rank 9 Aligned Residues 352 % Identity 20% Template c1ivhD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:isovaleryl-coa dehydrogenase; PDBTitle: structure of human isovaleryl-coa dehydrogenase at 2.62 angstroms resolution: structural basis for substrate3 specificity Resolution 2.60 Å

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		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.					130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.
Query SS confidence																																																													.	.	.	.
Query Sequence		R	Y	D	A	Q	G	R	R	L	D	D	V	R	F	H	P	A	W	H	L	L	M	Q	A	L	C	T	N	R	V	H	N	L	A	W	E	E	D	A	R	S	G	A	F	V	A	R	A	A	R	F	M	L	H	A	Q	V	E	A	.	.	.	.	G	S	L	C	P	I	T	M	T	F	A	A	T	P	L	L	L
Query Conservation																																																													.	.	.	.
Alig confidence																																																													.	.	.	.
Template Conservation
Template Sequence		H	L	A	P	K	A	Q	E	I	D	R	S	N	E	F	K	N	L	R	E	F	W	K	Q	L	G	N	L	G	V	L	G	I	T	A	P	V	Q	Y	G	G	S	G	L	G	Y	L	E	H	V	L	V	M	E	E	I	S	R	A	S	G	A	V	G	L	S	Y	G	A	H	S	N	L	C	I	N	Q	L	V	R
Template Known Secondary structure			T	T	T	T								T			T	T												T		T	T	T	T	S		G	G	G	T																																T	T	T
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		Q	M	L	P	A	P	F	Q	D	W	T	T	P	L	L	S	D	R	Y	D	S	H	L	L	P	G	G	Q	K	R	G	L	L	I	G	M	G	M	T	E	K	Q	G	G	S	D	V	M	S	N	T	T	R	A	E	R	L	E	D	G	S	Y	R	L	V	G	H	K	W	F	F	S	V	P	.	Q	S	D	A	H
Query Conservation																																																																												.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.																														.														.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Sequence		N	G	N	E	A	Q	K	E	K	Y	L	P	K	L	I	S	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	I	G	A	L	A	M	S	E	P	N	A	G	S	D	V	V	S	M	K	L	K	A	E	K	K	G	N	H	.	Y	I	L	N	G	N	K	F	W	I	T	N	G	P	D	A	D	V	L
Template Known Secondary structure																		T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	S								B	T	T	B	S	S	S	G	G	G									T	T		.												T	T	T	T		S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.														.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.		.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.			.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.				280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure												.	.																																													.	.	.
Query SS confidence												.	.																																													.	.	.
Query Sequence		L	V	L	A	Q	T	A	G	G	L	.	.	S	C	F	F	V	P	R	F	L	P	D	G	Q	R	N	A	I	R	L	E	R	L	K	D	K	L	G	N	R	S	N	A	S	C	E	V	E	F	Q	D	A	I	G	W	.	.	.	L	L	G	L	E	G	E	G	I	R	L	I	L	K	M	G	G	M	T	R	F
Query Conservation												.	.																																													.	.	.
Alig confidence												.	.																																													.	.	.
Template Conservation
Template Sequence		I	V	Y	A	K	T	D	L	A	A	V	P	A	S	R	G	I	T	A	F	I	V	E	K	G	M	P	G	F	S	T	S	K	K	L	D	K	L	G	M	R	G	S	N	T	C	E	L	I	F	E	D	C	K	I	P	A	A	N	I	L	G	H	E	N	K	G	V	Y	V	L	M	S	G	L	D	L	E	R	L
Template Known Secondary structure							S		T	T		S	S	G	G	G	G								T	T		T	T										S	S		T	T	S														G	G	G			S		T	T	B
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure
Query SS confidence
Query Sequence		D	C	A	L	G	S	H	A	M	M	R	R	A	F	S	L	A	I	Y	H	A	H	Q	R	H	V	F	G	N	P	L	I	Q	Q	P	L	M	R	H	V	L	S	R	M	A	L	Q	L	E	G	Q	T	A	L	L	F	R	L	A	R	A	W	D	R	R	A	D	A	K	E	A	L	W	A	R	L	F	T	P	A
Query Conservation
Alig confidence																																																																							.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.
Template Sequence		V	L	A	G	G	P	L	G	L	M	Q	A	V	L	D	H	T	I	P	Y	L	H	V	R	E	A	F	G	Q	K	I	G	H	F	Q	L	M	Q	G	K	M	A	D	M	Y	T	R	L	M	A	C	R	Q	Y	V	Y	N	V	A	K	A	C	D	E	G	H	C	T	A	.	.	.	.	.	.	K	D	C	A	G
Template Known Secondary structure				T																			T	T				T	T			G	G	G	S																													T	T	T					.	.	.	.	.	.
Template Predicted Secondary structure																																																																							.	.	.	.	.	.
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.							.	.	.	.	330
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	F	V	I	C	K	R	G	M	P	F	V	A	E	A	M	E	V	L	G	G	I	G	Y	C	E	E	S	E	L	P	R	L	Y	R	E	M	P	V	N	S	I	W	E	G	S	G	N	I	M	C	L	D	V	L	R	V	L	N	K	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	I	L	Y	S	A	E	C	A	T	Q	V	A	L	D	G	I	Q	C	F	G	G	N	G	Y	I	N	D	F	P	M	G	R	F	L	R	D	A	K	L	Y	E	I	G	A	G	T	S	E	V	R	R	L	V	I	G	R	A	F	N	A	D
Template Known Secondary structure																						G	G	G	G	G	S	T	T	S	T											T	T	T	T	T	S															T
Template Predicted Secondary structure
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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