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Job DescriptionP0ABB8
Confidence100.00%DateThu Jan 5 11:15:07 GMT 2012
Rank2Aligned Residues848
% Identity25%Templatec3b9bA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: structure of the e2 beryllium fluoride complex of the serca2 ca2+-atpase
Resolution2.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   43......50.........60 .........70.........80.........90.........100.........110........
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Query Sequence  LKMAVMPEEELWKTFDTH. PEGLNQAEVESAREQHGENKLPAQQPSPWWVHLWVCYRNPFNILLTILGAISYATEDL. . .
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Template Sequence  EAAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEEG
Template Known Secondary structure  TTGGGS
T

TTT
B


SS



S



GGGGGSTT

TTTTTSSS
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   2.......10.........20.........30.........40.........50.........60.........70.........80.
 
   119120.........130.........140.........150.........160.........170. ........180.........
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Query Sequence  . . . . . . . FAAGVIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVLRVINDKGENGW. . LEIPIDQLVPGDIIKLAA
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Template Sequence  EETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYR. . . . . . ADRKSVQRIKARDIVPGDIVEVAV
Template Known Secondary structure  S

TTS
GGG


S

B......SS
SS
GGG

TT
T
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   82.......90.........100.........110.........120.........130. ........140.........150.....
 
   190.........200... ......210.........220.........230.........240.........250.........260.......
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Query Sequence  GDMIPADLRILQAR. . DLFVAQASLTGESLPVEKAATTRQPEHSNPLECDTLCFMGTTVVSGTAQAMVIATGANTWFGQL
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Template Sequence  GDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKI
Template Known Secondary structure  T
B

S
SS




SS



S



SS

TTT
TT
TT


GGGS
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   156...160.........170.........180.........190.........200.........210.........220.........230.....
 
   268.270.........280.........290.........300.........310.. .......320.........330.......
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Query Sequence  AGRVSEQESEPNAFQQGISRVSMLLIRFMLVMAPVVLLINGYTKG. . . . . . . . . . DWWEAALFALSVAVGLTPEMLPMIV
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Template Conservation               
   
                                              
 


   
  
    
Template Sequence  RDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVI
Template Known Secondary structure  T





TTGGG
SS


TTTT

SSSSGGGS
TT
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   236...240.........250.........260.........270.........280.........290.........300.........310.....
 
   338.340.........350.........360.........370.........380.........390
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Query Sequence  TSTLARGAVKLSKQKVIVKHLDAIQNFGAMDILCTDKTGTLTQDKIVLENHTD. . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  TTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEV
Template Known Secondary structure  TTTSSTTGGG
S





B



TT

SSSSS


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   316...320.........330.........340.........350.........360.........370.........380.........390.....
 
   391........400.........410 .........420.........430....
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Query Sequence  . . . . . . . . . ISGKTSERVLHSAWLNSHYQ. . . . . . . . . . TGLKNLLDTAVLEGTDEESARSLA. . . . . . . . . . . . . . . . .
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Template Conservation                          
                 
   
 

                              
Template Sequence  LKNDKPIRSGQFDGLVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVI
Template Known Secondary structure  TT

GGG
S
S
TTTTS

TT



TTS
TT
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   396...400.........410.........420.........430.........440.........450.........460.........470.....
 
   435....440.........450.........460.. .......470.........480.........490.........500..... .
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Query Sequence  . SRWQKIDEIPFDFERRRMSVVVAENTEH. . . . . HQLVCKGALQEILNVCSQVRHNGEIVPLDDIMLRKIKRVTDTL. . N
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Template Sequence  RQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTG
Template Known Secondary structure  TTT


TTT
SSSSS

S



TTT

TST
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   476...480.........490.........500.........510.........520.........530.........540.........550.....
 
   507..510.........520.........530 .........540.........550.........560.........570.........
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Query Sequence  RQGLRVVAVATKYLPAREGDYQRA. . . . . . . DESDLILEGYIAFLDPPKETTAPALKALKASGITVKILTGDSELVAAKV
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Template Sequence  RDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI
Template Known Secondary structure  T


SS


STT


S
TTSS
S

B
TTTT

SS
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   556...560.........570.........580.........590.........600.........610.........620.........630.....
 
   580......... 590.........600.........610.........620.........630.........640.........650...
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Query Sequence  CHEVGLDAGE. . . . . . VVIGSDIETLSDDELANLAQRTTLFARLTPMHKERIVTLLKREGHVVGFMGDGINDAPALRAAD
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Template Sequence  CRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAE
Template Known Secondary structure  TSS
TT


TTTS


S

TTT


STTSSS
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   636...640.........650.........660.........670.........680.........690.........700.........710.....
 
   654.....660.........670.........680.........690.........700.........710.........720.........730...
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Query Sequence  IGISVDGAVDIAREAADIILLEKSLMVLEEGVIEGRRTFANMLKYIKMTASSNFGNVFSVLVASAFLPFLPMLPLHLLIQ
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Template Sequence  IGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWV
Template Known Secondary structure  TTS

STT

TT


SS
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   716...720.........730.........740.........750.........760.........770.........780.........790.....
 
   734.... .740.........750.........760.........770.........780.........790...
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Query Sequence  NLLYD. VSQVAIPFDNVDDEQIQKPQRWNPADLGRFMIFFGPISSIFDILTFCLMWWVFHA. . . . . . . . . . . . . . . . . . .
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Template Conservation             
        
    
      
                                               
Template Sequence  NLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMYAEDGPGVTYHQLTHFMQ
Template Known Secondary structure  TTTTTTT



SGGGTS



SSS
SS
T
TTS



TGGG
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   796...800.........810.........820.........830.........840.........850.........860.........870.....
 
   794.....800.........810.........820.........830... ......840.........850...... ..
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Query Sequence  . . . . . . . . . . . . NTPETQTLFQSGWFVVGLLSQTLIVHMIRTRRVPFIQSCA. . SWPLMIMTVIVMIVGIALPFSPL. AS
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Template Conservation                        
  
   
                        
                
        
Template Sequence  CTEDHPHFEGLDCEIFEAPEPMTMALSVLVTIEMCNALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDPLPM
Template Known Secondary structure 

TT
TTSTT

GGGGG
TT
SSS
TTTS
TTS
ST
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   876...880.........890.........900.........910.........920.........930.........940.........950.....
 
   859860.........870.........880.........890......
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Query Sequence  YLQLQALPLSYFPWLVAILAGYMTLTQLVKGFYSRRYG
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Template Conservation   
    
                    
 
   
    
Template Sequence  IFKLKALDLTQWLMVLKISLPVIGLDEILKFIARNYLE
Template Known Secondary structure  TT




TTS
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   956...960.........970.........980.........990...
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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