Job Description P0ABB8 Confidence 100.00% Date Thu Jan 5 11:15:07 GMT 2012 Rank 6 Aligned Residues 809 % Identity 26% Template c3b8cB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:atpase 2, plasma membrane-type; PDBTitle: crystal structure of a plasma membrane proton pump Resolution 3.60 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																																																																												.	.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.	.
Query Sequence		L	K	M	A	V	M	P	E	E	E	L	W	K	T	F	D	T	H	P	E	G	L	N	Q	A	E	V	E	S	A	R	E	Q	H	G	E	N	K	L	P	A	Q	Q	P	S	P	W	W	V	H	L	W	V	C	Y	R	N	P	F	N	I	L	L	T	I	L	G	A	I	S	Y	A	T	E	.	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.	.
Alig confidence																																														.																														.	.	.	.	.	.
Template Conservation																																														.
Template Sequence		V	D	L	E	K	I	P	I	E	E	V	F	Q	Q	L	K	C	S	R	E	G	L	T	T	Q	E	G	E	D	R	I	Q	I	F	G	P	N	K	L	E	E	K	K	E	.	S	K	L	L	K	F	L	G	F	M	W	N	P	L	S	W	V	M	E	M	A	A	I	M	A	I	A	L	A	N	G	D	G	R	P
Template Known Secondary structure					S	S	S	S	T	T			T	T	T	S	S	S		S	S		S	T								S	S	S			S			T	T	T	T			.		T	T	S	S	T	T	S				G	G	G	S	S								G	G	G	G	S	S			T	T	S
Template Predicted Secondary structure																																														.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
			117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	D	L	F	A	A	G	V	I	A	L	M	V	A	I	S	T	L	L	N	F	I	Q	E	A	R	S	T	K	A	A	D	A	L	K	A	M	V	S	N	T	A	T	V	L	R	V	I	N	D	K	G	E	N	G	W	L	E	I	P	I	D	Q	L	V	P	G	D	I	I	K	L	A	A	G	D	M	I	P	A
Query Conservation		.
Alig confidence		.																																														.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.
Template Sequence		P	D	W	Q	D	F	V	G	I	I	C	L	L	V	I	N	S	T	I	S	F	I	E	E	N	N	A	G	N	A	A	A	A	L	M	A	G	L	A	P	K	T	K	V	L	R	.	.	.	.	.	.	D	G	K	W	S	E	Q	E	A	A	I	L	V	P	G	D	I	V	S	I	K	L	G	D	I	I	P	A
Template Known Secondary structure		S			T	T								T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T					T	T	T	S		S								.	.	.	.	.	.	S	S		S					T	T	T	T		T	T	S	B					S	S				S	S
Template Predicted Secondary structure																																																.	.	.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.							.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	R	I	L	Q	A	R	D	L	F	V	A	Q	A	S	L	T	G	E	S	L	P	V	E	K	A	A	T	T	R	Q	P	E	H	S	N	P	L	E	C	D	T	L	C	F	M	G	T	T	V	V	S	G	T	A	Q	A	M	V	I	A	T	G	A	N	T	W	F	G	Q	L	A	G	R	V	S	E	Q	E
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Template Sequence		D	A	R	L	L	E	G	D	P	L	K	V	D	Q	S	A	L	T	G	E	S	L	P	V	T	K	H	P	G	Q	E	.	.	.	.	.	.	.	.	.	.	.	.	.	V	F	S	G	S	T	C	K	Q	G	E	I	E	A	V	V	I	A	T	G	V	H	T	F	F	G	K	A	A	H	L	V	D	S	T	.
Template Known Secondary structure			B					S	S		B						S	T	T			S	S				B	S	S			B	.	.	.	.	.	.	.	.	.	.	.	.	.			S						S						B			S		T	T	S	S	S	S	T	T				S			S		.
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.														.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		S	E	P	N	A	F	Q	Q	G	I	S	R	V	S	M	L	L	I	R	F	M	L	V	M	A	P	V	V	L	L	I	N	G	Y	.	T	K	G	D	W	W	E	A	A	L	F	A	L	S	V	A	V	G	L	T	P	E	M	L	P	M	I	V	T	S	T	L	A	R	G	A	V	K	L	S	K	Q	K	V	I
Query Conservation																																				.
Alig confidence																																				.
Template Conservation
Template Sequence		N	Q	V	G	H	F	Q	K	V	L	T	A	I	G	N	F	C	I	C	S	I	A	I	G	M	V	I	E	I	I	V	M	Y	P	I	Q	R	R	K	Y	R	D	G	I	D	N	L	L	V	L	L	I	G	G	I	P	I	A	M	P	T	V	L	S	V	T	M	A	I	G	S	H	R	L	S	Q	Q	G	A	I
Template Known Secondary structure		S			S	T	T	T	T	T	T																			S	T	T	T	T	T	T	T		S		S	T	T									T	T	T	T			S	S	T	T	T					T	T	T							T	T	T	S	B
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.				390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure																																					.	.	.
Query SS confidence																																					.	.	.
Query Sequence		V	K	H	L	D	A	I	Q	N	F	G	A	M	D	I	L	C	T	D	K	T	G	T	L	T	Q	D	K	I	V	L	E	N	H	T	.	.	.	D	I	S	G	K	T	S	E	R	V	L	H	S	A	W	L	N	S	H	Y	Q	T	G	L	K	N	L	L	D	T	A	V	L	E	G	T	D	E	E	S	A	R
Query Conservation																																					.	.	.
Alig confidence																																					.	.	.																						.	.																	.	.
Template Conservation																																																													.	.																	.	.
Template Sequence		T	K	R	M	T	A	I	E	E	M	A	G	M	D	V	L	C	S	D	K	T	G	T	L	T	L	N	K	L	S	V	D	K	N	L	V	E	V	F	C	K	G	V	E	K	D	Q	V	L	L	F	A	A	M	A	S	R	V	E	.	.	N	Q	D	A	I	D	A	A	M	V	G	M	L	A	D	P	.	.	K
Template Known Secondary structure			S	S	G	G	G					T	T													S								S					S	S		S	S	T	T														S	S	.	.	S			S								T	T			T	.	.	T
Template Predicted Secondary structure																																																													.	.																	.	.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.			370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.			.
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	A	S	R	W	Q	K	I	D	E	I	P	F	D	F	E	R	R	R	M	S	V	V	V	A	E	N	T	E	H	H	Q	L	V	C	K	G	A	L	Q	E	I	L	N	V	C	S	Q	V	R	H	N	G	E	I	V	P	L	D	D	I	M	L	R	K	I	K	R	V	T	D	T	L	N	R	Q	G	L	R
Query Conservation
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.
Template Sequence		E	A	R	A	G	I	R	E	V	H	F	L	P	F	N	P	V	D	K	R	T	A	L	T	Y	I	D	G	S	G	N	W	H	R	V	S	K	G	A	P	E	Q	I	L	E	L	A	K	.	.	.	.	.	.	.	.	.	.	A	S	N	D	L	S	K	K	V	L	S	I	I	D	K	Y	A	E	R	G	L	R
Template Known Secondary structure						S	S			B							T	T	T						B	B		S	S	S	S		B		B					S	G	G	G	T	S	S	S	S		.	.	.	.	.	.	.	.	.	.			S	T	T	T	T	T									T	T	T	T
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.											.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
		512	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		V	V	A	V	A	T	K	Y	L	P	A	R	E	G	D	Y	Q	R	A	D	E	S	D	L	I	L	E	G	Y	I	A	F	L	D	P	P	K	E	T	T	A	P	A	L	K	A	L	K	A	S	G	I	T	V	K	I	L	T	G	D	S	E	L	V	A	A	K	V	C	H	E	V	G	L	D	A	G	E	.	.
Query Conservation																																																																																.	.
Alig confidence															.	.	.																																																															.	.
Template Conservation															.	.	.
Template Sequence		S	L	A	V	A	R	Q	V	V	P	E	K	T	.	.	.	K	E	S	P	G	A	P	W	E	F	V	G	L	L	P	L	F	D	P	P	R	H	D	S	A	E	T	I	R	R	A	L	N	L	G	V	N	V	K	M	I	T	G	D	Q	L	A	I	G	K	E	T	G	R	R	L	G	M	G	T	N	M	Y	P
Template Known Secondary structure								B				S	S	S	.	.	.	S	S																																T	T								S	S						T					T	T	T		T	T			S	S
Template Predicted Secondary structure															.	.	.
Template SS confidence
		457	.	.	460	.	.	.	.	.	.	.	.	.				470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.
					590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	V	V	I	G	S	D	I	E	T	L	S	D	D	E	L	A	N	L	A	Q	R	T	T	L	F	A	R	L	T	P	M	H	K	E	R	I	V	T	L	L	K	R	E	G	H	V	V	G	F	M	G	D	G	I	N	D	A	P	A	L	R	A	A	D	I	G	I	S	V	D	G	A	V	D	I	A	R
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		S	S	A	L	L	G	T	H	K	D	A	N	L	A	S	I	P	V	E	E	L	I	E	K	A	D	G	F	A	G	V	F	P	E	H	K	Y	E	I	V	K	K	L	Q	E	R	K	H	I	V	G	M	T	G	D	G	V	N	D	A	P	A	L	K	K	A	D	I	G	I	A	V	A	D	A	T	D	A	A	R
Template Known Secondary structure		S	S	S			B	G	G	G	G	T	T	S			S								T	S																					T	T					B				S	S	T	T							S	S	S					S	S	S					G
Template Predicted Secondary structure
Template SS confidence
		534	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.
		667	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	A	D	I	I	L	L	E	K	S	L	M	V	L	E	E	G	V	I	E	G	R	R	T	F	A	N	M	L	K	Y	I	K	M	T	A	S	S	N	F	G	N	V	F	S	V	L	V	A	S	A	F	L	P	F	L	P	M	L	P	L	H	L	L	I	Q	N	L	L	Y	D	V	S	Q	V	A	I	P	F
Query Conservation
Alig confidence																																																								.
Template Conservation																																																								.
Template Sequence		G	A	S	D	I	V	L	T	E	P	G	L	S	V	I	I	S	A	V	L	T	S	R	A	I	F	Q	R	M	K	N	Y	T	I	Y	A	V	S	I	T	I	R	I	V	F	G	F	M	L	I	A	L	I	W	.	E	F	D	F	S	A	F	M	V	L	I	I	A	I	L	N	D	G	T	I	M	T	I	S	K
Template Known Secondary structure		G	G		S	S		B	S	S		S					T					T																			T	T	T	T	T	S	T	T					S	S		.	S	S		S														T	T	T
Template Predicted Secondary structure																																																								.
Template SS confidence
		614	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.		.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.
		747	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.								.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.
Query Sequence		D	N	V	D	D	E	Q	I	Q	K	P	Q	R	W	N	P	A	D	L	G	R	F	M	I	F	F	G	P	I	S	S	I	F	D	I	L	T	F	C	L	M	W	W	V	F	H	A	N	T	.	.	.	.	.	.	.	P	E	T	Q	T	L	F	Q	S	G	W	F	V	V	G	L	L	S	Q	T	L	I	V	H
Query Conservation																																																			.	.	.	.	.	.	.
Alig confidence								.	.																																										.	.	.	.	.	.	.
Template Conservation								.	.
Template Sequence		D	R	V	K	P	S	.	.	P	T	P	D	S	W	K	L	K	E	I	F	A	T	G	V	V	L	G	G	Y	Q	A	I	M	T	V	I	F	F	W	A	A	H	K	T	D	F	F	S	D	T	F	G	V	R	S	I	R	D	N	N	H	E	L	M	G	A	V	Y	L	Q	V	S	I	I	S	Q	A	L	I	F
Template Known Secondary structure							S	.	.	S				S	T	T	T	T	T	T	T	T	T						S	S	T					T	T	S	S	S		T	T	T	T	T	T	T	T					S	S			G	G	G	T					T	T	T	T	T	T	T	S	S	T	T	G	G	G	T	T
Template Predicted Secondary structure								.	.
Template SS confidence
		693	.	.	.	.	.			.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
		820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	R	T	R	R	V	P	F	I	Q	S	C	A	S	W	P	L	M	I	M	T	V	I	V	M	I	V	G	I	A	L	P	F	S	P	L	A	S	Y	L	Q	L	Q	A	L	P	L	S	Y	F	P	W	L	V	A	I	L	A	G	Y	M	T	L	T	Q	L	V	K	G	F	Y	S	R
Query Conservation
Alig confidence													.
Template Conservation													.
Template Sequence		V	T	R	S	R	S	W	S	F	V	E	.	R	P	G	A	L	L	M	I	A	F	L	I	A	Q	L	I	A	T	L	I	A	V	Y	A	N	W	E	F	A	K	I	R	G	I	G	W	G	W	A	G	V	I	W	L	Y	S	I	V	T	Y	F	P	L	D	V	F	K	F	A	I	R	Y
Template Known Secondary structure			S	S	S		T	T	T	S	T	T	.	S	T	T	T	T	T	S	G	G	G	S	S	T	T	T	T	T	T	S	S	S	S	S					S	S						T	T	T	T								T	G	G	G	T											T	T
Template Predicted Secondary structure													.
Template SS confidence
		771	.	.	.	.	.	.	.	.	780	.		.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.