Job Description P0ABB8 Confidence 100.00% Date Thu Jan 5 11:15:07 GMT 2012 Rank 5 Aligned Residues 792 % Identity 25% Template c1mhsA_ PDB info PDB header:membrane protein, proton transport Chain: A: PDB Molecule:plasma membrane atpase; PDBTitle: model of neurospora crassa proton atpase Resolution 8.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		55	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		K	T	F	D	T	H	.	P	E	G	L	N	Q	A	E	V	E	S	A	R	E	Q	H	G	E	N	K	L	P	A	Q	Q	P	S	P	W	W	V	H	L	W	V	C	Y	R	N	P	F	N	I	L	L	T	I	L	G	A	I	S	Y	A	T	E	D	L	F	A	A	G	V	I	A	L	M	V	A	I	S	T	L
Query Conservation								.
Alig confidence								.																											.
Template Conservation																																			.
Template Sequence		D	M	L	Q	T	D	T	R	V	G	L	T	S	E	E	V	V	Q	R	R	R	K	Y	G	L	N	Q	M	K	E	E	K	E	.	N	H	F	L	K	F	L	G	F	F	V	G	P	I	Q	F	V	M	E	G	A	A	V	L	A	A	G	L	E	D	W	V	D	F	G	V	I	C	G	L	L	L	L	N	A	V
Template Known Secondary structure		T	T	T	T	T								S										T	S	S	S	S							.	S	S					T																			T	T		S		S	S
Template Predicted Secondary structure																																			.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		L	N	F	I	Q	E	A	R	S	T	K	A	A	D	A	L	K	A	M	V	S	N	T	A	T	V	L	R	V	I	N	D	K	G	E	N	G	W	L	E	I	P	I	D	Q	L	V	P	G	D	I	I	K	L	A	A	G	D	M	I	P	A	D	L	R	I	L	Q	A	R	D	.	L	F	V	A	Q	A	S	L
Query Conservation																																																																									.
Alig confidence																														.	.	.	.	.	.																																						.
Template Conservation																														.	.	.	.	.	.
Template Sequence		V	G	F	V	Q	E	F	Q	A	G	S	I	V	D	E	L	K	K	T	L	A	L	K	A	V	V	L	R	.	.	.	.	.	.	D	G	T	L	K	E	I	E	A	P	E	V	V	P	G	D	I	L	Q	V	E	E	G	T	I	I	P	A	D	G	R	I	V	T	D	D	A	F	L	Q	V	D	Q	S	A	L
Template Known Secondary structure																T	T	T	T				S	S						.	.	.	.	.	.	S	S	S						T	T	T	S		T	T	S						T	T		B		S	S								S	S					B		T	T	T
Template Predicted Secondary structure																														.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.							.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	E	S	L	P	V	E	K	A	A	T	T	R	Q	P	E	H	S	N	P	L	E	C	D	T	L	C	F	M	G	T	T	V	V	S	G	T	A	Q	A	M	V	I	A	T	G	A	N	T	W	F	G	Q	L	A	G	R	V	S	E	Q	E	S	E	P	N	A	F	Q	Q	G	I	S	R	V	S	M	L	L
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	G	E	S	L	A	V	D	K	H	K	G	D	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	V	F	A	S	S	A	V	K	R	G	E	A	F	V	V	I	T	A	T	G	D	N	T	F	V	G	R	A	A	A	L	V	N	A	A	S	G	G	S	G	H	F	T	E	V	L	N	G	I	G	T	I	L
Template Known Secondary structure		S	S									S	S			.	.	.	.	.	.	.	.	.	.	.	.	.			S		B			S												S	T	T		S	T	T	T	T	T	S	S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.														.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	F	M	L	V	M	A	P	V	V	L	L	I	N	G	Y	T	K	G	D	W	W	E	A	A	L	F	A	L	S	V	A	V	G	L	T	P	E	M	L	P	M	I	V	T	S	T	L	A	R	G	A	V	K	L	S	K	Q	K	V	I	V	K	H	L	D	A	I	Q	N	F	G	A	M	D	I	L	C	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	L	V	I	F	T	L	L	I	V	W	V	S	S	F	Y	R	S	N	P	I	V	Q	I	L	E	F	T	L	A	I	T	I	I	G	V	P	V	G	L	P	A	V	V	T	T	T	M	A	V	G	A	A	Y	L	A	K	K	K	A	I	V	Q	K	L	S	A	I	E	S	L	A	G	V	E	I	L	C	S
Template Known Secondary structure															T	T	T	T	T	T																		S																						T	T						T	T	T						T
Template Predicted Secondary structure
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430		.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		D	K	T	G	T	L	T	Q	D	K	I	V	L	E	N	H	T	D	I	S	G	K	T	S	E	R	V	L	H	S	A	W	L	N	S	H	Y	Q	T	G	L	K	N	L	L	D	T	A	V	L	E	G	T	D	E	E	S	A	.	R	S	L	A	S	R	W	Q	K	I	D	E	I	P	F	D	F	E	R	R	R
Query Conservation																																																												.
Alig confidence																																																												.
Template Conservation
Template Sequence		D	K	T	G	T	L	T	K	N	K	L	S	L	H	D	P	Y	T	V	A	G	V	D	P	E	D	L	M	L	T	A	C	L	A	A	S	R	K	K	K	G	I	D	A	I	D	K	A	F	L	K	S	L	K	Y	Y	P	R	A	K	S	V	L	S	K	Y	K	V	L	Q	F	H	P	F	D	P	V	S	K	K
Template Known Secondary structure			T	B	T	T	T	B	S	S		S						B			S					T									S				S	S		S			S												S	S	S			G	G	G	S												T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
		452	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	V	V	V	A	E	N	T	E	H	H	Q	L	V	C	K	G	A	L	Q	E	I	L	N	V	C	S	Q	V	R	H	N	G	E	I	V	P	L	D	D	I	M	L	R	K	I	K	R	V	T	D	T	L	N	R	Q	G	L	R	V	V	A	V	A	T	K	Y	L	P	A	R	E	G	D	Y	Q	R	A	D
Query Conservation
Alig confidence																																			.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	V	A	V	V	E	S	P	Q	G	E	R	I	T	C	V	K	G	A	P	L	F	V	L	K	T	V	E	E	D	H	P	I	.	.	.	.	.	.	P	E	E	V	D	Q	A	Y	K	N	K	V	A	E	F	A	T	R	G	F	R	S	L	G	V	A	R	K	R	G	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									S	S	S	S																			S	S			.	.	.	.	.	.																	T	S	S										S	S	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																			.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490							.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520
		532	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.					.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.
Query SS confidence																																																											.	.	.	.
Query Sequence		E	S	D	L	I	L	E	G	Y	I	A	F	L	D	P	P	K	E	T	T	A	P	A	L	K	A	L	K	A	S	G	I	T	V	K	I	L	T	G	D	S	E	L	V	A	A	K	V	C	H	E	V	G	L	D	A	G	.	.	.	.	E	V	V	I	G	S	D	I	E	T	L	S	D	D	E	L	A	N	L
Query Conservation																																																											.	.	.	.
Alig confidence																																																											.	.	.	.
Template Conservation
Template Sequence		E	G	S	W	E	I	L	G	I	M	P	C	M	D	P	P	R	H	D	T	Y	K	T	V	C	E	A	K	T	L	G	L	S	I	K	M	L	T	G	D	A	V	G	I	A	R	E	T	S	R	Q	L	G	L	G	T	N	I	Y	N	A	E	R	L	G	L	G	G	G	G	D	M	P	G	S	E	V	Y	D	F
Template Known Secondary structure		S		S					B	B																						T								S	S													T	S	S		S				S	S	S	S	S	S		B				G	G	G	G	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		521	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600
		608	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	R	T	T	L	F	A	R	L	T	P	M	H	K	E	R	I	V	T	L	L	K	R	E	G	H	V	V	G	F	M	G	D	G	I	N	D	A	P	A	L	R	A	A	D	I	G	I	S	V	D	G	A	V	D	I	A	R	E	A	A	D	I	I	L	L	E	K	S	L	M	V	L	E	E	G	V	I	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	A	A	D	G	F	A	E	V	F	P	Q	H	K	Y	N	V	V	E	I	L	Q	Q	R	G	Y	L	V	A	M	T	G	D	G	V	N	D	A	P	S	L	K	K	A	D	T	G	I	A	V	E	G	S	S	D	A	A	R	S	A	A	D	I	V	F	L	A	P	G	L	G	A	I	I	D	A	L	K	T
Template Known Secondary structure		T	T	T	T	S				S			S	T											T	T	T										G	G	G							S	S						T	T	S							S	S	S				S	S			S
Template Predicted Secondary structure
Template SS confidence
		601	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680
		688	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	R	T	F	A	N	M	L	K	Y	I	K	M	T	A	S	S	N	F	G	N	V	F	S	V	L	V	A	S	A	F	L	P	F	L	P	M	L	P	L	H	L	L	I	Q	N	L	L	Y	D	V	S	Q	V	A	I	P	F	D	N	V	D	D	E	Q	I	Q	K	P	Q	R	W	N	P	A	D	L	G	R
Query Conservation
Alig confidence																																		.																																	.	.
Template Conservation																																		.																																	.	.
Template Sequence		S	R	Q	I	F	H	R	M	Y	A	Y	V	V	Y	R	I	A	L	S	I	H	L	E	I	F	L	G	L	W	I	A	I	.	L	N	R	S	L	N	I	E	L	V	V	F	I	A	I	F	A	D	V	A	T	L	A	I	A	Y	D	N	A	P	Y	S	.	.	Q	T	P	V	K	W	N	L	P	K	L	W	G
Template Known Secondary structure																																	S	.		S																T	T										S	G	G	G	.	.	G	S						S	S	S		S	S
Template Predicted Secondary structure																																		.																																	.	.
Template SS confidence
		681	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.		.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.			.	.	.	.	.	750	.	.	.	.	.	.	.
		768	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.		.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		F	M	I	F	F	G	P	I	S	S	I	F	D	I	L	T	F	C	L	M	W	W	V	F	H	.	A	N	T	P	E	T	Q	T	L	F	Q	S	G	W	F	V	V	G	L	L	S	Q	T	L	I	V	H	M	I	R	T	R	R	V	P	F	I	Q	S	C	A	S	W	P	L	M	I	M	T	V	I	V	M	I
Query Conservation																											.
Alig confidence																											.
Template Conservation
Template Sequence		M	S	V	L	L	G	V	V	L	A	V	G	T	W	I	T	V	T	T	M	Y	A	Q	G	E	N	G	G	I	V	Q	N	F	G	N	M	D	E	V	L	F	L	Q	I	S	L	T	E	N	W	L	I	F	I	T	R	A	N	G	P	F	W	S	S	I	P	S	W	Q	L	S	G	A	I	F	L	V	D	I	L
Template Known Secondary structure																						T	T	T	T	T	T			S	S	S	S	S	S	S																	T	T	S	S	S		S	S	S		S			S		T
Template Predicted Secondary structure
Template SS confidence
		758	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.
		847	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	I	A	L	P	F	S	P	L	A	S	Y	L	Q	L	Q	A	L	P	L	S	Y	F	P	W	L	V	A	I	L	A	G	Y	M	T	L	T	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	C	F	T	I	W	G	W	F	E	H	S	D	T	S	I	V	A	V	V	R	I	W	I	F	S	F	G	I	F	C	I	M	G	G	V	Y	Y	I
Template Known Secondary structure							S	S	S	S	T	T	S		S					T								T	T
Template Predicted Secondary structure
Template SS confidence
		838	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.