Job Description P76055 Confidence 77.62% Date Thu Jan 5 12:17:55 GMT 2012 Rank 77 Aligned Residues 117 % Identity 13% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	Q	Y	N	L	N	K	L	Q	K	R	L	R	R	N	V	G	E	A	I	A	D	F	N	M	I	E	E	G	D	R	I	M	V	C	L	S	G	G	K	D	S	Y	T	M	L	E	I	L	R	N	L	Q	Q	S	A	P	I	N	F	S	L	V	A	V	N	L	D	Q	K	Q	P	G	F	P	E	H	V	L
Query Conservation
Alig confidence																																																										.	.	.												.
Template Conservation																																																										.	.	.												.
Template Sequence		K	R	K	M	I	Q	H	A	V	F	K	E	L	V	K	L	V	D	P	G	V	K	A	W	T	P	T	K	G	N	V	I	M	F	V	G	L	Q	G	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	R	K	.	.	.	G	W	K	T	C	L	I	C	A	D	T	.	F	R	A	G	A	F	D	Q	L
Template Known Secondary structure																													S	S								S	T	T	S	S															T	.	.	.	T											.	S	S	S
Template Predicted Secondary structure																																																										.	.	.												.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.				.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	Y	L	E	K	L	G	V	E	Y	K	I	V	E	E	N	T	Y	G	I	V	K	E	K	I	P	E	G	K	T	T	C	S	L	C	S	R	L	R	R	G	I	L	Y	R	T	A	T	E	L	G	A	T	K	I	A	L
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template Sequence		K	Q	N	A	T	K	A	R	I	P	F	Y	G	S	Y	T	.	.	.	.	.	.	.	.	.	.	.	.	E	M	D	P	V	I	I	A	S	E	G	V	E	K	F	.	.	.	.	.	K	N	E	N	F	E	I	I	I	V
Template Known Secondary structure									T									.	.	.	.	.	.	.	.	.	.	.	.		S														.	.	.	.	.			T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.													.	.	.	.	.	170	.	.	.	.	.	.	.	.	.						180	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions