Job Description P76055 Confidence 21.09% Date Thu Jan 5 12:17:55 GMT 2012 Rank 181 Aligned Residues 111 % Identity 19% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40					.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																											.	.	.	.
Query SS confidence																											.	.	.	.
Query Sequence		N	K	L	Q	K	R	L	R	R	N	V	G	E	A	I	A	D	F	N	M	I	E	E	G	D	.	.	.	.	R	I	M	V	C	L	S	G	G	K	D	S	Y	T	M	L	E	I	L	R	N	L	Q	Q	S	A	P	I	N	F	S	L	V	A	V	N	L	D	Q	K	Q	P	G	F	P	E	H	V	L	P	E
Query Conservation																											.	.	.	.
Alig confidence																											.	.	.	.																										.	.	.																.
Template Conservation																																																								.	.	.																.
Template Sequence		E	V	I	L	A	T	V	Y	E	A	L	K	E	A	L	G	G	E	A	R	L	P	V	L	K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	.	.	.	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	.	A	R	E	Q	L	R	L
Template Known Secondary structure																T	T	S	S								S	S									T	T	S	S															T	.	.	.	T										S	S				.
Template Predicted Secondary structure																																																								.	.	.																.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.				.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	E	K	L	G	V	E	Y	K	I	V	E	E	N	T	Y	G	I	V	K	E	K	I	P	E	G	K	T	T	C	S	L	C	S	R	L	R	R	G	I	L	Y	R	T	A	T	E	L	G	A	T	K	I	A	L
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Template Sequence		L	G	E	K	V	G	V	P	V	L	E	V	M	D	.	.	.	.	.	.	.	.	.	.	.	.	G	E	S	P	E	S	I	R	R	R	V	E	E	.	.	.	.	.	K	A	R	L	E	A	R	D	L	I	L	V
Template Known Secondary structure							T								T	.	.	.	.	.	.	.	.	.	.	.	.	T													.	.	.	.	.						T		S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.													.	.	.	.	.	.	.	.	170	.	.	.	.						.	.	.	.	.	180	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions