Job Description P76055 Confidence 57.85% Date Thu Jan 5 12:17:55 GMT 2012 Rank 106 Aligned Residues 118 % Identity 14% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																					.	.
Query SS confidence																																					.	.
Query Sequence		K	K	E	Q	Y	N	L	N	K	L	Q	K	R	L	R	R	N	V	G	E	A	I	A	D	F	N	M	I	E	E	G	D	R	I	M	.	.	V	C	L	S	G	G	K	D	S	Y	T	M	L	E	I	L	R	N	L	Q	Q	S	A	P	I	N	F	S	L	V	A	V	N	L	D	Q	K	Q	P	G	F	P	E
Query Conservation																																					.	.
Alig confidence																																					.	.																							.	.	.																.
Template Conservation																																																													.	.	.																.
Template Sequence		E	R	K	E	W	F	I	S	I	V	Y	D	E	L	S	K	L	F	G	G	D	K	E	P	N	V	N	P	T	K	L	P	F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	.	.	.	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	.	A	Y
Template Known Secondary structure																			T	T		S						S		S	S	S	S								S	S	S	S	S	S	T	T	T										T	T	.	.	.	S					B						S	S	S		.	S
Template Predicted Secondary structure																																																													.	.	.																.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.				.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	V	L	P	E	Y	L	E	K	L	G	V	E	Y	K	I	V	E	E	N	T	Y	G	I	V	K	E	K	I	P	E	G	K	T	T	C	S	L	C	S	R	L	R	R	G	I	L	Y	R	T	A	T	E	L	G	A	T	K	I	A	L
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template Sequence		D	Q	L	L	Q	L	G	N	Q	I	G	V	Q	V	Y	.	.	.	.	.	.	.	.	.	.	.	.	G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	.	.	.	.	.	V	D	I	F	V	K	N	K	M	D	I	I	I	V
Template Known Secondary structure											T	T					.	.	.	.	.	.	.	.	.	.	.	.			S	S				T	T							.	.	.	.	.							T	T		S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.													.	.	.	.	160	.	.	.	.	.	.	.	.	.	170						.	.	.	.	.	.	.	.	.	180	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions