Job Description Q46834 Confidence 99.61% Date Thu Jan 5 12:34:59 GMT 2012 Rank 4 Aligned Residues 213 % Identity 12% Template c3qo6B_ PDB info PDB header:photosynthesis Chain: B: PDB Molecule:protease do-like 1, chloroplastic; PDBTitle: crystal structure analysis of the plant protease deg1 Resolution 2.50 Å

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		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Y	Q	P	V	A	A	Q	V	K	Q	P	E	P	V	P	V	A	E	T	R	L	N	V	V	L	R	G	I	A	F	G	A	R	P	G	A	V	I	E	E	G	G	K	Q	Q	V	Y	L	Q	G	E	T	L	G	S	H	N	A	V	I	E	E	I	N	R	D	H	V	M	L	R	Y	Q	G	K	I	E	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	I	D	A	P	K	N	K	L	R	P	I	P	V	G	V	S	A	D	L	L	V	G	Q	K	V	F	A	I	G	N	P	F	G	L	D	H	T	L	T	T	G	V	I	S	G	L	R	R	E	I	S	S	A	A	T	G	R	P	I	Q	D	V	I	Q	T	D	A	A	I	N	P	G	N	S	G	G	P	L	L
Template Known Secondary structure							G	G	G						B			S	T	T			T	T									G	G	G		T	T																	S	S	S	S											S				T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.						.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.
Query Sequence		S	L	A	E	E	E	R	S	T	V	A	V	T	N	K	K	A	V	S	D	E	A	K	Q	A	V	A	E	P	A	V	S	V	P	V	E	I	P	A	A	V	R	Q	A	L	A	K	D	P	Q	K	I	F	N	Y	I	Q	L	T	P	V	R	K	E	G	.	.	.	.	.	I	V	G	Y	A	A	K	P	G	A
Query Conservation																																																																			.	.	.	.	.
Alig confidence																									.	.	.	.	.	.																																					.	.	.	.	.
Template Conservation																									.	.	.	.	.	.
Template Sequence		D	S	S	G	T	L	I	G	I	N	T	A	I	Y	S	P	S	G	A	S	S	G	V	.	.	.	.	.	.	G	F	S	I	P	V	D	T	V	G	G	I	V	D	Q	L	V	R	F	G	K	V	T	R	P	I	L	G	I	K	F	A	P	D	Q	S	V	E	Q	L	G	V	S	G	V	L	V	L	D	A	P
Template Known Secondary structure			T	T	S												S	S	S	S			S		.	.	.	.	.	.																				S	S													S	S	T	T	G	G	G	T			S
Template Predicted Secondary structure																									.	.	.	.	.	.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310							.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
		216	.	.	.	220	.	.	.	.	.	.	.												.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	R	S	L	F	D	A	S	G	F	K	E	.	.	.	.	.	.	.	.	.	.	.	G	D	I	A	I	A	L	N	Q	Q	D	F	T	D	P	R	A	M	I	A	L	M	R	Q	L	P	S	M	D	S	I	Q	L	T	V	L	R	K	G	A	R	H	D	I	S	I	A	L	R	Y	R	L
Query Conservation														.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	S	G	P	A	G	K	A	G	L	Q	S	T	K	R	D	G	Y	G	R	L	V	L	G	D	I	I	T	S	V	N	G	T	K	V	S	N	G	S	D	L	Y	R	I	L	D	Q	C	K	V	G	D	E	V	T	V	E	V	L	R	G	D	H	K	E	K	I	S	V	T	L	E	P	K	P
Template Known Secondary structure		T	T	S					T	T								S	S	S												T	T				S	S									T	T			T	T										S	S	S	B
Template Predicted Secondary structure
Template SS confidence
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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