Job Description P14565 Confidence 99.69% Date Wed Jan 25 15:20:38 GMT 2012 Rank 17 Aligned Residues 252 % Identity 19% Template c2pjrF_ PDB info PDB header:hydrolase/dna Chain: F: PDB Molecule:protein (helicase pcra); PDBTitle: helicase product complex Resolution 2.90 Å

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		961	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		V	P	G	E	L	M	E	K	L	T	S	G	Q	R	A	A	T	R	M	I	L	E	T	S	D	R	F	T	V	V	Q	G	Y	A	G	V	G	K	T	T	Q	F	R	A	V	M	S	A	V	N	M	L	P	E	S	E	R	P	R	V	V	G	L	G	P	T	H	R	A	V	G	E	M	R	S	A	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																				.	.	.	.																																																							.	.	.	.
Template Conservation																				.	.	.	.
Template Sequence		L	S	E	Q	L	L	A	H	L	N	K	E	Q	Q	E	A	V	R	.	.	.	.	T	T	E	G	P	L	L	I	M	A	G	A	G	S	G	K	T	R	V	L	T	H	R	I	A	Y	L	M	A	E	K	H	V	A	P	W	N	I	L	A	I	T	F	T	N	K	A	A	R	E	M	R	E	R	V	Q	S	L
Template Known Secondary structure			T	T	T	T	T	T	T	S										.	.	.	.			S	S								T	T	S									T					T	T	T	S				G	G	G						S						T							T	T	T
Template Predicted Secondary structure																				.	.	.	.
Template SS confidence
		704	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.					.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.
								1037	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	G	V	D	A	Q	T	L	A	S	F	L	H	D	T	Q	L	Q	Q	R	S	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	G	G	A	A	E	D	V	W	I	S	T	F	H	S	M	C	V	R	I	L	R	R	D	I	D	R	I	G	I	N	R	N	F	S	I	L	D	P	T	D	Q	L	S	V	M	K	T	I	L	K	E	K	N	I	D	P	K	K	F	E	P	R	T	I	L	G	T	I	S	A	A	K	N	E	L	L	P	P	E
Template Known Secondary structure		S		T	T	S	T	T	S																	G	G	G	G	T			T	T																		T	T	S			S	S	S	S	S														T	T	T
Template Predicted Secondary structure
Template SS confidence
		780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.
																																																						1059	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	P	D	F	S	N	T	L	F	L	L	D	E	S	S	M	V	G	N	T	D	M	A	R	A	Y	A	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	F	A	K	R	A	S	T	Y	Y	E	K	V	V	S	D	V	Y	Q	E	Y	Q	Q	R	L	L	R	N	H	S	L	D	F	D	D	L	I	M	T	T	I	Q	L	F	D	R	V	P	D	V	L	H	Y	Y	Q	Y	K	F	Q	Y	I	H	I	D	E	Y	Q	D	T	N	R	A	Q	Y	T	L	V	K	K	L
Template Known Secondary structure						S			S	S																			T	T																		S												S					S		G	G	G		B
Template Predicted Secondary structure
Template SS confidence
		860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.
		1087	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.					.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.
Predicted Secondary structure																															.	.	.	.
Query SS confidence																															.	.	.	.
Query Sequence		I	A	A	G	G	G	R	A	V	A	S	G	D	T	D	Q	L	Q	A	I	A	P	G	Q	P	F	R	L	Q	.	.	.	.	Q	T	R	S	A	A	D	V	A	I	M	K	E	I	V	R	Q	T	P	E	L	R	E	A	V	Y	S	L	I	N	R	D	V	E	R	A	L	S	G	L	E	S	V	K	P	S	Q
Query Conservation																															.	.	.	.
Alig confidence					.																										.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	E	R	.	F	Q	N	I	C	A	V	G	D	A	D	Q	S	I	Y	R	W	R	G	A	D	I	Q	N	I	L	S	F	E	R	D	Y	P	N	A	K	V	I	L	L	E	Q	N	Y	R	S	T	K	R	I	L	Q	A	A	N	E	V	I	E	H	N	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T	T	.	T									G	G	G				T	T	T	T	B		T					T						T	T										S	S	S													T	T		S	S	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		940	.	.		.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.
		1163	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	R	Q	E	G	A	W	A	P	E	H	S	V	T	E	F	S	H	S	Q	E	A	K	L	A	E	A	Q	Q	K	A	M	L	K	G	E	A	F	P	D	V	P	M	T	L	Y	E	A	I	V	R	D	Y	T	G	R	T	P	E	A	R	E	Q	T	L	I	V	T	H	L	N	E	D	R	R	V	L	N	S
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	K	P	K	R	I	W	T	E	N	P	E	G	K	P	I	L	Y	Y	E	A	M	N	E	A	D	E	A	Q	F	V	A	G	R	I	R	E	A	V	E	R	G	E	R	R	Y	R	D	F	A	V	L	Y	R	T	N	A	Q	S	R	V	M	E	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S								S	S												S	S																	T	T	S	S			G	G	G						S	S	G	G	G	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																		1006	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.
		1243	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	H	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	L	L	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		1070	.	.	.

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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