 |
Job Description | P00816 | Confidence | 50.06% | Date | Thu Jan 5 10:56:55 GMT 2012 |
Rank | 80 | Aligned Residues | 24 |
% Identity | 8% | Template | d1ttya_ |
SCOP info | DNA/RNA-binding 3-helical bundle
| Sigma3 and sigma4 domains of RNA polymerase sigma factors
| Sigma4 domain
|
Resolution | UNK |
|
  |   |
25 | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | D | L | S | F | A | E | I | A | D | G | T | G | L | A | E | A | F | V | T | A | A | L | L |
Query Conservation |   |
|
|
|
|
|   |   |
|
|   |   |
|
|   |
|
|
|
|   |
|
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |
|
|
|   |   |
|
|
|
|   |   |   |
|
|   |   |   |   |
Template Sequence |   |
K | P | K | T | L | E | E | V | G | Q | Y | F | N | V | T | R | E | R | I | R | Q | I | E | V |
Template Known Secondary structure |   |
S |
|
|
|  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
349 | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|