Job Description P00816 Confidence 27.30% Date Thu Jan 5 10:56:55 GMT 2012 Rank 130 Aligned Residues 49 % Identity 16% Template c3mkzU_ PDB info PDB header:dna-binding protein/dna Chain: U: PDB Molecule:protein sopb; PDBTitle: structure of sopb(155-272)-18mer complex, p21 form Resolution 2.98 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.													.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.				.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.				.
Query Sequence		D	L	S	F	A	E	I	A	D	G	T	G	L	A	E	A	F	V	T	A	A	L	.	.	.	.	.	.	.	.	.	.	.	.	L	G	Q	.	Q	A	L	P	A	D	A	A	R	L	V	G	A	K	L	D	L	D	E	D	S	I	L	L
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.				.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.				.
Template Conservation
Template Sequence		A	G	N	I	S	A	L	A	D	A	E	N	I	S	R	K	I	I	T	R	C	I	N	T	A	K	L	P	K	S	V	V	A	L	F	S	H	P	G	E	L	S	A	R	S	G	D	A	L	Q	K	A	F	T	D	K	E	E	L	L	K	Q
Template Known Secondary structure		T	T								T	T	T														T	S						T	T	S	S	S	T	T	S	S										T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions