|   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | I | Q | S | Q | I | N | R | N | I | R | L | D | L | A | D | A | I | L | L | S | K | A | K | K | D | L | S | F | A | E | I | A | D | G | T | G | L | A | E | A | F | V | T | A | A | L | L | G | Q | Q | A | L | P | A | D | A | A | R | L | V | G | A | K | L | D | L | D | E | D | S | I | L | L | L | Q | M | I | P | L |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|
|   |
|
|   |   |
|
|
|
|
|   |   |
|
|   |   |
|
|   |
|
|
|
|   |
|
|   |   |   |
|
|
|   |   |   |   |   |   |
|   |
|
|   |   |
|
|   |
|   |   |
|   |   |   |   |
|   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|
|   |
|
|   |   |
|
|
|
|
|   |   |
|
|   |   |
|
|   |
|
|
|
|   |
|
|   |   |   |
|
|
|   |   |   |   |   |   |
|   |
|
|   |   |
|
|   |
|   |   |
|   |   |   |   |
|   |   |   |
|   |
Template Sequence |   |
M | I | Q | S | Q | I | N | R | N | I | R | L | D | L | A | D | A | I | L | L | S | K | A | K | K | D | L | S | F | A | E | I | A | D | G | T | G | L | A | E | A | F | V | T | A | A | L | L | G | Q | Q | A | L | P | A | D | A | A | R | L | V | G | A | K | L | D | L | D | E | D | S | I | L | L | L | Q | M | I | P | L |
Template Known Secondary structure |   |
|
|
| B |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  | T | T | S | S | S |
|  |  |  |  |  |  |  |  | T | T | S | S |
|
|
|  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |  |  |  | S | B |
|
|
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
  |
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | G | C | I | D | D | R | I | P | T | D | P | T | M | Y | R | F | Y | E | M | L | Q | V | Y | G | T | T | L | K | A | L | V | H | E | K | F | G | D | G | I | I | S | A | I | N | F | K | L | D | V | K | K | V | A | D | P | E | G | G | E | R | A | V | I | T | L | D | G | K | Y | L | P | T | K | P | F |
Query Conservation |   |
|
|   |   |   |   |   |   |
|
|
|
|   |
|
|
|   |
|
|   |   |   |
|
|
|   |   |   |
|   |
|
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |   |
|   |
|   |   |
|   |   |
|
|
|
|
|
|
|
|   |   |
|
|
|
|
|
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |   |   |   |   |
|
|
|
|   |
|
|
|   |
|
|   |   |   |
|
|
|   |   |   |
|   |
|
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |   |
|   |
|   |   |
|   |   |
|
|
|
|
|
|
|
|   |   |
|
|
|
|
|
|   |   |   |
Template Sequence |   |
R | G | C | I | D | D | R | I | P | T | D | P | T | M | Y | Q | F | Y | E | M | L | Q | V | Y | G | T | T | L | K | A | L | V | H | E | K | F | G | D | G | I | I | S | A | I | N | F | K | L | D | V | K | K | V | A | D | P | E | G | G | E | R | A | V | I | T | L | D | G | K | Y | L | P | T | K | P | F |
Template Known Secondary structure |   |
|
|
|
| T | T | S | S |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . |
  |