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Job DescriptionP08394
Confidence99.85%DateThu Jan 5 11:01:26 GMT 2012
Rank20Aligned Residues324
% Identity28%Templatec3e1sA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:exodeoxyribonuclease v, subunit recd; PDBTitle: structure of an n-terminal truncation of deinococcus radiodurans recd2
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   16...20.........30.........40.........50.........60.........70.........80.........90.....
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Query Sequence  QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHELRIACLRETTDNP
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Template Sequence  HRLVVLTGGPGTGKSTTTKAVADLAES. . . . . . . . . . . . LGLEVGLCAPTGKAARRLGEVT. . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
S

TTS
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   353......360.........370......... 380.........390.........400.
 
   96...100.........110.........120.........130.........140.........150.........160.........170.....
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Query Sequence  LYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPL
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Template Conservation  ...........................   
 
 
  
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . GRTASTVHRLLGYGPQGF. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ...........................TS
TTTT...................................
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   402.......410.........
 
   176...180.........190.........200.........210.........220.........230.........240.........250.....
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Query Sequence  PREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRR
Query Conservation                                                                                  
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   256...260.........270.........280.........290.........300.........310.........320.........330.....
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Query Sequence  KFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEI
Query Conservation                                                                                  
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   336...340.........350.........360.........370.........380.........390.........400.........410.....
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Query Sequence  RETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDP
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Template Sequence  . . . . . . . . . RHNHLE. . . . . . . . . . . . . . . . . . . . . . . . PAPYDLLIVDEVSMMGDALMLSLLAAV. . PPGARVLLVGDT
Template Known Secondary structure  .........S
SSSS........................

S
S

GGG

TTS..
TT

T
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   420..... ....430.........440.........450.. .......460....
 
   416...420.........430.........440........ .450.........460.........470.........480.........490...
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Query Sequence  KQAIYAFRGADIFTYMKARSEVHAHYTLDTNWR. . SAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKG
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Template Conservation   

  
  
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Template Sequence  DQLPPVDAGLPLLALAQA. . . . APTIKLTQVYRQAAKNPIIQAAHGLLHGEAPAWGDKRLNLTEIEPDGGARRVALMVRE
Template Known Secondary structure  TS


SSS

....S





T
TT





BTT

STT
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   465....470.........480.. .......490.........500.........510.........520.........530.........540
 
   494.....500.........510.........520.........530.........540..... ....550.........560.
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Query Sequence  ETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDD. . . . . . . . . . . . ARPVRASDISVLVRSR
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Template Sequence  LGGPGAVQVLTPMRKGPLG. . . . . . MDHLNYHLQALFNPGEGGVRIAEGEARPGDTVVQTKNDYNNEIFNGTLGMVLKAE
Template Known Secondary structure  TTSGGG
S
SSSTTS......S

S


SSS
TT

S
BTTTTB
TT

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   541........550......... 560.........570.........580.........590.........600.........610....
 
   562.......570.........580.........590.........600.........610.........620.........630.........640.
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Query Sequence  QEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVV
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Template Conservation      ............................................................................
Template Sequence  GARL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  SS
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   615...
 
   642.......650.........660.........670.........680.........690.........700.........710.........720.
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Query Sequence  VEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSN
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Template Conservation  ......................................................................... 
     
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TVDFDGN
Template Known Secondary structure  .........................................................................TT
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   619620.....
 
   722.......730.........740.........750.........760.........770.........780.........790.........800.
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Query Sequence  ASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRL
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Template Sequence  VVELTGAELFNLQLGYALTVHRAQGSEWGTVLGVLHEAHMPML. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SRNL
Template Known Secondary structure 
GGGGTT
STT


GGGGGG
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   626...630.........640.........650.........660........ .670..
 
   802.......810.........
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Query Sequence  LYVALTRSVWHCSLGVAP
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Template Sequence  VYTALTRARDRFFSAGSA
Template Known Secondary structure  T
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   673......680.........690
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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