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Job DescriptionP08394
Confidence100.00%DateThu Jan 5 11:01:26 GMT 2012
Rank6Aligned Residues491
% Identity23%Templatec2pjrF_
PDB info PDB header:hydrolase/dnaChain: F: PDB Molecule:protein (helicase pcra); PDBTitle: helicase product complex
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   10.........20.........30.........40.........50.........60.........70.........80.........
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Query Sequence  PLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHELRIACLR
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Template Conservation 

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Template Sequence  AVRTT. EGPLLIMAGAGSGKTRVLTHRIAYLMA. . . . . . . . EKHVAPWNILAITFTNKAAREMRERVQSLLGG. . . . . . .
Template Known Secondary structure 

.SS

TTS
TTT........TS


GGGS
TTTTS
T.......
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   719720... ......730.........740.........750 .........760.........770.........780..
 
   90.........100.........110.........120.........130.........140.........150.........160.........
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Query Sequence  ETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWR
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Template Conservation  ..............................      
 
 
     

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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AAEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQ. . . . . . . . . . .
Template Known Secondary structure  ..............................TSTTSGGGGT

TT


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   783......790.........800.........810.........820.
 
   170.........180.........190.........200.........210.........220.........230.........240.........
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Query Sequence  RHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIES
Query Conservation                                                                                  
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Template Conservation  ......................................................................          
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LSVMKTILKE
Template Known Secondary structure  ......................................................................TT
Template Predicted Secondary structure  ......................................................................
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   822.......830.
 
   250.........260.........270.........280.........290.........300.........310.........320.........
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Query Sequence  SGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVIT
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Template Conservation                  
   
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Template Sequence  KNIDPKKFEPRTILGTISAAKNELLPPEQFAKRAST. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . YYE
Template Known Secondary structure  S

SSSSS
TTT

S

S.........................................S
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   832.......840.........850.........860....... ..870
 
   330.........340.........350.........360.........370.........380.........390.........400.........
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Query Sequence  RALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETAL
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Template Conservation                         
        
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Template Sequence  KVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDR. . VPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLA. . ERFQNI
Template Known Secondary structure  TT
..S
SS
GGG
BT..TTT

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   871........880.........890.........900..... ....910.........920.........930.........940 ......
 
   410.........420.........430........ .440.........450.........460.........470.........480.......
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Query Sequence  LLIGDPKQAIYAFRGADIFTYMKARSEVH. . AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQAL
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Template Conservation    


  
 
    
                    
   


   
    
                             
Template Sequence  CAVGDADQSIYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKPKRIWTENPEGKPILYYEA
Template Known Secondary structure 
GGG


TTTTB
TT
TT

SSS
TT
SSS




SS










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   947..950.........960.........970.........980.........990.........1000.........1010.........1020......
 
   488.490.........500.........510.........520.........530.........540.........550.........560.......
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Query Sequence  RFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQV
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Template Conservation   .........................    
   
   
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Template Sequence  M. . . . . . . . . . . . . . . . . . . . . . . . . NEADEAQFVAGRIREAVERG. . . . . . . . . . . . . . ERRYRDFAVLYRTNAQSRVM
Template Known Secondary structure  S.........................STTS..............S

GGG




SSGGGS
Template Predicted Secondary structure 
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   1027 ..1030.........1040....... ..1050.........1060.......
 
   568.570.........580.........590.........600.........610.........620.........630...
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Query Sequence  RDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN. . . . . . . . . . . . . .
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Template Conservation     
   


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Template Sequence  EEMLLKANIPY. QIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAADHELSLFEALG
Template Known Secondary structure  TT


.

SSSS
GGGS
TT
TTSS

S

TTTTT

T
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   1068.1070........ .1080.........1090.........1100.........1110.........1120.........1130.........1140......
 
   634.....640.........650.........660.........670...... ...680.........690.........
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Query Sequence  . . . . . . . . . . DEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLA. . TAGGERRLTDILHISELLQEAGT. .
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Template Conservation                          
            
            
              
  
           
Template Sequence  ELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSVTELVEEVLDKSGYREMLKAERTIEAQSRLENLDEFLSVTKHFENVS
Template Known Secondary structure  T
TTSS

STTTTTS
SSTTTTS

TTTTS
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   1147..1150.........1160.........1170.........1180.........1190.........1200.........1210.........1220......
 
   700.........710..
Predicted Secondary structure 


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Query Sequence  QLESEHALVRWLS
Query Conservation         
   
 
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Template Conservation      
  

  
 
Template Sequence  DDKSLIAFLTDLA
Template Known Secondary structure  SS

Template Predicted Secondary structure 



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   1227..1230.........
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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