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Job DescriptionP08394
Confidence100.00%DateThu Jan 5 11:01:26 GMT 2012
Rank2Aligned Residues593
% Identity23%Templatec2is6B_
PDB info PDB header:hydrolase/dnaChain: B: PDB Molecule:dna helicase ii; PDBTitle: crystal structure of uvrd-dna-adpmgf3 ternary complex
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   10.........20.........30.........40.........50.........60.........70.........80.........
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Query Sequence  PLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHELRIACLR
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Template Sequence  AVAAP. RSNLLVLAGAGSGKTRVLVHRIAWLMS. . . . . . . . VENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT. . . . . . .
Template Known Secondary structure  T

.SS


TTSS........TS


GGGSSTT.......
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   17..20. ........30.........40........ .50.........60.........70.........80
 
   90.........100.........110.........120.........130.........140.........150.........160.........
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Query Sequence  ETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWR
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Template Conservation  ..............................      
 
  
     
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQ. . . . . . . . . . .
Template Known Secondary structure  ..............................TTTT
TT

TT

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   81........90.........100.........110.........
 
   170.........180.........190.........200.........210.........220.........230.........240.........
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Query Sequence  RHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIES
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Template Conservation  ......................................................................          
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LRLLKRLIKA
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   120.........
 
   250.........260.........270.........280.........290.........300.........310.........320.........
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Query Sequence  SGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVIT
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Template Conservation                                 ..............................................   
Template Sequence  MNLDEKQWPPRQAMWYINSQKDEGLRPHHIN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PVE
Template Known Secondary structure  TT

TTTS
TT

S



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   130.........140.........150.........160 ...
 
   330.........340.........350.........360.........370.........380.........390.........400.........
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Query Sequence  RALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETAL
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Template Sequence  QTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLN. . KPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLA. . GDTGKV
Template Known Secondary structure  T..


SSGGG

..TTT
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   168.170.........180.........190.........200.. .......210.........220.........230....... ..240...
 
   410.........420.........430........ .440.........450.........460.........470.........480.......
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Query Sequence  LLIGDPKQAIYAFRGADIFTYMKARSEVH. . AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQAL
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Template Sequence  MIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNNGR. . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
GGG


GGGT

TSTT


B

SS
TTSTT
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   244.....250.........260.........270.........280.........290.........300...
 
   488.490.........500.........510.........520.........530.........540.........550.........560.......
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Query Sequence  RFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQV
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Template Sequence  . . . . . LGKKLWTDGADGEPISLYCAFNELDEARFVVNRIKTWQDNG. . . . . . . . . . . . . . . GALAECAILYRSNAQSRVL
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B
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S
SSTT...............

GGGSSGGG
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   304.....310.........320.........330.........340.... .....350.........360...
 
   568.570.........580.........590.........600.........610.........620.........630...
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Query Sequence  RDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN. . . . . . . . . . . . . .
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Template Conservation     
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Template Sequence  EEALLQASMPY. RIYGGMRFFERQEIKDALSYLRLIVNRNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACR
Template Known Secondary structure  TT

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SSS
GGGS
TT
TTSS

S

TS
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   364.....370.... .....380.........390.........400.........410.........420.........430.........440..
 
   634.....640.........650.........660.........670......... 680.........690.........700
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Query Sequence  . . . . . . . . . . . DEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAG. . GERRLTDILHISELLQEAGTQ
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Template Conservation                                                                    
             
Template Sequence  ELLQEKALAGRAASALQRFMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSED
Template Known Secondary structure  TT
S
TTTS
TSS
TTTS



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   443......450.........460.........470.........480.........490.........500.........510.........520..
 
   701........710.........720.........730.........740.........750.........760.........770.........780
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Query Sequence  LESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDL
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Template Sequence  LMPLQAFLSHAAL. . . . . . . . . EAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLD. . . . . . . . . . .
Template Known Secondary structure  S
.........TGGG
S


S


TT




BTBBTTBGGGGS...........
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   528.530.........540 .........550.........560.........570.........580.......
 
   781........790.........800.........810.........820......... 830.........840.........850
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Query Sequence  NAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKG. . DTDVHQSALGRLLQKGEPQDA
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Template Sequence  . . . . . . . . . . EGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT
Template Known Secondary structure  ..........STTTTS
TT


B
S
TTT

SSSS
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   588.590.........600.........610.........620.........630.........640.........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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