Job Description P0CF64 Confidence 99.61% Date Thu Jan 5 11:31:22 GMT 2012 Rank 15 Aligned Residues 133 % Identity 19% Template d1c6va_ SCOP info Ribonuclease H-like motif Ribonuclease H-like Retroviral integrase, catalytic domain Resolution 3.00

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		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	W	C	S	D	G	F	E	F	C	C	D	N	G	E	R	L	R	V	T	F	A	L	D	C	C	D	R	E	A	L	H	W	A	V	T	T	G	G	F	N	S	E	T	V	Q	D	V	M	L	G	A	V	E	R	R	F	G	N	D	L	P	S	S	P	V	E	W	L	T	D	N	G	S	C	Y	R	A	N	E
Query Conservation
Alig confidence													.	.	.	.	.																																						.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.																																						.	.	.	.	.	.	.	.	.
Template Sequence		T	W	Q	M	D	C	T	H	L	E	G	.	.	.	.	.	K	I	V	I	V	A	V	H	V	A	S	G	F	I	E	A	E	V	I	P	Q	E	T	G	R	Q	T	A	L	F	L	L	K	L	A	G	R	.	.	.	.	.	.	.	.	.	W	P	I	T	H	L	H	T	D	N	G	A	N	F	A	S	Q	E
Template Known Secondary structure											T	T	.	.	.	.	.									T	T	S									S	S		S													T	T	.	.	.	.	.	.	.	.	.	S											S	S	T	T	S	S
Template Predicted Secondary structure													.	.	.	.	.																																						.	.	.	.	.	.	.	.	.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70						.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.										.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	Q	F	A	R	M	L	G	L	E	P	K	N	T	A	V	R	S	P	E	S	N	G	I	A	E	S	F	V	K	T	I	K	R	D	Y	I	S	I	M	P	K	P	D	G	L	T	A	A	K	N	L	A	E	A	F	E	H	Y	N	E	W	H	P	H	S	A	L	G	Y	R	S	P	R	E	Y	L	R	Q
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Sequence		V	K	M	V	A	W	W	A	G	I	E	H	T	F	G	E	A	M	N	H	H	L	K	N	Q	I	D	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	Q	A	N	S	V	E	T	I	V	L	M	A	V	H	C	M	N	H	.	K	R	R	G	G	I	G	D	M	T	P	A	E	R	L	I	N
Template Known Secondary structure										T									T	T	T								T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S	S	S															S	.				S	S	S	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.														.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		294
Predicted Secondary structure
Query SS confidence
Query Sequence		R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		203

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions