Job Description P0CF64 Confidence 99.83% Date Thu Jan 5 11:31:22 GMT 2012 Rank 2 Aligned Residues 155 % Identity 16% Template d1asua_ SCOP info Ribonuclease H-like motif Ribonuclease H-like Retroviral integrase, catalytic domain Resolution 1.70

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	T	G	R	V	A	V	K	E	S	N	Q	R	W	C	S	D	G	F	E	F	C	C	D	N	G	E	R	L	R	V	T	F	A	L	D	C	C	D	R	E	A	L	H	W	A	V	T	T	G	G	F	N	S	E	T	V	Q	D	V	M	L	G	A	V	E	R	R	F	G	N	D	L	P	S	S	P	V	E	W
Query Conservation
Alig confidence																										.																																										.	.	.	.	.	.	.	.
Template Conservation																										.																																										.	.	.	.	.	.	.	.
Template Sequence		P	L	R	E	P	R	G	L	G	P	L	Q	I	W	Q	T	D	F	T	L	E	P	R	M	.	A	P	R	S	W	L	A	V	T	V	D	T	A	S	S	A	I	V	V	T	Q	H	G	R	V	T	S	V	A	A	Q	H	H	W	A	T	A	I	A	V	L	.	.	.	.	.	.	.	.	G	R	P	K	A	I
Template Known Secondary structure					S	S	S	T	T	S													G	G	G	.	T	T	S									T	T	T									S	S																		.	.	.	.	.	.	.	.				S
Template Predicted Secondary structure																										.																																										.	.	.	.	.	.	.	.
Template SS confidence
		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.									.	.	.	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.							.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.
Query Sequence		L	T	D	N	G	S	C	Y	R	A	N	E	T	R	Q	F	A	R	M	L	G	L	E	P	K	N	T	A	V	R	S	P	E	S	N	G	I	A	E	S	F	V	K	T	I	K	R	D	Y	I	S	.	.	.	.	.	.	I	M	P	K	P	D	G	L	T	A	A	K	N	L	A	E	A	F	E	H	Y	N	E
Query Conservation																																																					.	.	.	.	.	.
Alig confidence																																																					.	.	.	.	.	.
Template Conservation
Template Sequence		K	T	D	N	G	S	C	F	T	S	K	S	T	R	E	W	L	A	R	W	G	I	A	H	T	T	G	I	P	G	N	S	Q	G	Q	A	M	V	E	R	A	N	R	L	L	K	D	K	I	R	V	L	A	E	G	D	G	F	M	K	R	I	P	T	S	K	Q	G	E	L	L	A	K	A	M	Y	A	L	N	H
Template Known Secondary structure					S						S											T						S			S	S	S	S	S																						T	T		S	S	S																			S
Template Predicted Secondary structure
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	H	P	H	S	A	L	G	Y	R	S	P
Query Conservation
Alig confidence			.							.
Template Conservation			.							.
Template Sequence		F	.	E	R	G	E	N	T	.	K	T	N
Template Known Secondary structure			.		S		T	T		.
Template Predicted Secondary structure			.							.
Template SS confidence
		199		200	.	.	.	.	.		.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions