Job Description P0CF64 Confidence 99.62% Date Thu Jan 5 11:31:22 GMT 2012 Rank 14 Aligned Residues 144 % Identity 21% Template c3hpgC_ PDB info PDB header:transferase Chain: C: PDB Molecule:integrase; PDBTitle: visna virus integrase (residues 1-219) in complex with ledgf2 ibd: examples of open integrase dimer-dimer interfaces Resolution 3.28 Å

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		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	N	Q	R	W	C	S	D	G	F	E	F	C	C	D	N	G	E	R	L	R	V	T	F	A	L	D	C	C	D	R	E	A	L	H	W	A	V	T	T	G	G	F	N	S	E	T	V	Q	D	V	M	L	G	A	V	E	R	R	F	G	N	D	L	P	S	S	P	V	E	W	L	T	D	N	G	S	C	Y
Query Conservation
Alig confidence															.	.	.	.	.																																									.	.	.	.	.	.	.	.		.
Template Conservation															.	.	.	.	.																																									.	.	.	.	.	.	.	.		.
Template Sequence		K	M	I	D	H	W	Q	V	D	Y	T	H	Y	.	.	.	.	.	E	D	K	I	I	L	V	W	V	E	T	N	S	G	L	I	Y	A	E	R	V	K	G	E	T	G	Q	E	F	R	V	Q	T	M	K	W	Y	A	M	F	.	.	.	.	.	.	.	.	A	.	P	K	S	L	Q	S	D	N	G	P	A	F
Template Known Secondary structure															.	.	.	.	.	S	S									T	T	T									S																		S	.	.	.	.	.	.	.	.		.		S						S
Template Predicted Secondary structure															.	.	.	.	.																																									.	.	.	.	.	.	.	.		.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.						60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.									100		.	.	.	.	.	.	.	.	.	110	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	N	E	T	R	Q	F	A	R	M	L	G	L	E	P	K	N	T	A	V	R	S	P	E	S	N	G	I	A	E	S	F	V	K	T	I	K	R	D	Y	I	S	I	M	P	K	P	D	G	L	T	A	A	K	N	L	A	E	A	F	E	H	Y	N	E	W	H	P	H	S	A	L	G	Y	R	S	P	R	E
Query Conservation
Alig confidence																																																			.	.																	.							.
Template Conservation																																																			.	.																	.							.
Template Sequence		V	A	E	S	T	Q	L	L	M	K	Y	L	G	I	E	H	T	T	G	I	P	W	N	P	Q	S	Q	A	L	V	E	R	T	H	Q	T	L	K	N	T	L	E	K	L	I	P	M	F	N	.	.	A	F	E	S	A	L	A	G	T	L	I	T	L	N	I	K	.	R	K	G	G	L	G	.	T	S	P	M	D
Template Known Secondary structure														T						S	S				T	T																				G	G	G		S	.	.	S														T	T	.			B	T	T	T	.	B
Template Predicted Secondary structure																																																			.	.																	.							.
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.			.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.		.	.	.	.	.
		290	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		200	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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