Job Description P0CF64 Confidence 99.86% Date Thu Jan 5 11:31:22 GMT 2012 Rank 1 Aligned Residues 152 % Identity 18% Template c3f9kV_ PDB info PDB header:viral protein, recombination Chain: V: PDB Molecule:integrase; PDBTitle: two domain fragment of hiv-2 integrase in complex with ledgf ibd Resolution 3.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	E	S	N	Q	R	W	C	S	D	G	F	E	F	C	C	D	N	G	E	R	L	R	V	T	F	A	L	D	C	C	D	R	E	A	L	H	W	A	V	T	T	G	G	F	N	S	E	T	V	Q	D	V	M	L	G	A	V	E	R	R	F	G	N	D	L	P	S	S	P	V	E	W	L	T	D	N	G	S
Query Conservation
Alig confidence																		.	.	.	.	.																																							.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.																																							.	.	.	.	.	.	.	.	.
Template Sequence		V	N	A	E	L	G	T	W	Q	M	D	C	T	H	L	E	.	.	.	.	.	G	K	I	I	I	V	A	V	H	V	A	S	G	F	I	E	A	E	V	I	P	Q	E	S	G	R	Q	T	A	L	F	L	L	K	L	A	S	R	.	.	.	.	.	.	.	.	.	W	P	I	T	H	L	H	T	D	N	G	A
Template Known Secondary structure						T	T										T	.	.	.	.	.	T									T	T	T	T								S	S															T	T	.	.	.	.	.	.	.	.	.	S											T
Template Predicted Secondary structure																		.	.	.	.	.																																							.	.	.	.	.	.	.	.	.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.						70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.										.	.	110	.	.	.	.	.	.	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	Y	R	A	N	E	T	R	Q	F	A	R	M	L	G	L	E	P	K	N	T	A	V	R	S	P	E	S	N	G	I	A	E	S	F	V	K	T	I	K	R	D	Y	I	S	I	M	P	K	P	D	G	L	T	A	A	K	N	L	A	E	A	F	E	H	Y	N	E	W	H	P	H	S	A	L	G	Y	R	S	P
Query Conservation
Alig confidence																																																						.	.															.
Template Conservation																																																						.	.															.
Template Sequence		N	F	T	S	Q	E	V	K	M	V	A	W	W	I	G	I	E	Q	S	F	G	V	P	Y	N	P	Q	S	Q	G	V	V	E	A	M	N	H	H	L	K	N	Q	I	S	R	I	R	E	Q	A	N	T	.	.	I	E	T	I	V	L	M	A	V	H	C	M	N	F	.	K	R	R	G	G	I	G	D	M	T	P
Template Known Secondary structure		T	T	T												T						S	S		S	S	S	T	T	T	T																	G	G	G		S		.	.															.	T			B	T	T	T	T	B
Template Predicted Secondary structure																																																						.	.															.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.			.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.
		288	.		290	.	.	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		R	E	.	Y	L	R	Q	R	A	C
Query Conservation				.
Alig confidence				.
Template Conservation
Template Sequence		S	E	R	L	I	N	M	I	T	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions