Job Description P0CF64 Confidence 96.73% Date Thu Jan 5 11:31:22 GMT 2012 Rank 29 Aligned Residues 84 % Identity 11% Template c1hlvA_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:major centromere autoantigen b; PDBTitle: crystal structure of cenp-b(1-129) complexed with the cenp-2 b box dna Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.												40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	W	T	G	K	K	V	D	S	A	R	A	L	I	A	R	G	.	W	G	V	S	L	V	S	R	C	L	R	V	S	R	A	Q	L	H	V	I	L	R	.	.	.	.	.	.	.	.	.	.	.	R	T	D	D	W	M	D	G	R	R	S	R	H	T	D	D	T	D	V	L	L	R	I	H	H	V	I	G	E
Query Conservation																			.																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	T	F	R	E	K	S	R	I	I	Q	E	V	E	E	N	P	D	L	R	K	G	E	I	A	R	R	F	N	I	P	P	S	T	L	S	T	I	L	K	N	K	R	A	I	L	A	S	E	R	K	Y	G	V	A	S	T	C	R	K	T	N	K	L	S	P	Y	D	K	L	E	G	L	L	I	A	W	F	Q	Q
Template Known Secondary structure																		T	T	S										T												T												G	G	G	G	G	T								T	T
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	T	Y	G	Y	R	R	V	W	A	L	L	R	R	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	R	A	A	G	L	P	V	K	G	I	I	L	K	E	K
Template Known Secondary structure			G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions