Job Description P63183 Confidence 3.71% Date Thu Jan 5 12:07:53 GMT 2012 Rank 74 Aligned Residues 442 % Identity 10% Template c3mkuA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter Resolution 4.20 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		T	D	N	K	Q	S	L	P	A	I	T	L	A	A	I	G	V	V	Y	G	D	I	G	T	S	P	L	Y	T	L	R	E	C	L	S	G	Q	F	G	F	.	G	V	E	R	D	A	V	F	G	F	L	S	L	I	F	W	L	L	I	F	V	V	S	I	K	Y	L	T	F	V	M	R	A	D	N	A	G	E	G
Query Conservation																																										.
Alig confidence																																										.																																						.	.
Template Conservation																																																																																.	.
Template Sequence		H	R	Y	K	K	E	A	S	N	L	I	K	L	A	T	P	V	L	I	A	S	V	A	Q	T	G	M	G	F	V	D	T	I	M	A	G	G	V	S	A	I	D	M	A	A	V	S	I	A	A	S	I	W	L	P	S	I	L	F	G	V	G	L	L	M	A	L	V	P	V	V	A	Q	L	N	G	A	G	.	.
Template Known Secondary structure																																								T	T	T	T	T	T																								G	G	G		T	T	S		S	S	S	.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	L	T	L	M	S	L	A	G	R	N	T	S	A	R	T	T	S	M	L	V	I	M	G	L	I	G	G	S	F	F	Y	G	E	V	V	I	T	P	A	I	S	V	M	S	A	I	E	G	L	E	I	V	A	P	Q	L	D	T	W	I	V	P	L	S	I	I	V	L	T	L	L	F	M	I	Q	K	H	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	R	Q	H	K	I	P	F	E	V	H	Q	G	L	I	L	A	L	L	V	S	V	P	I	I	A	V	L	F	Q	T	Q	F	I	I	R	F	M	D	V	E	E	A	M	A	T	K	T	V	G	Y	M	H	A	V	I	F	A	V	P	A	Y	L	L	F	Q	A	L	R	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	S	S	S	S																															S	S		S	S	T	T																											T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	M	V	G	K	L	F	A	P	I	M	L	T	W	F	L	I	L	A	G	L	G	L	R	S	I	I	A	N	P	E	V	L	H	A	L	N	P	M	W	A	V	H	F	F	L	E	Y	K	T	V	S	F	I	A	L	G	A	V	V	L	S	I	T	G	V	E	A	L	Y	A	D	M	G	H	F	G	K	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	T	D	G	M	S	L	T	K	P	A	M	V	I	G	F	I	G	L	L	L	N	I	P	L	N	W	I	F	V	Y	G	K	F	G	A	P	E	L	G	G	V	G	C	G	V	A	T	A	I	V	Y	W	I	M	L	L	L	L	L	F	Y	I	V	T	S	K	R	L	A	H	V	K	V	F	E	T	F	H	K
Template Known Secondary structure		T	T		T	T	S																									T	T		S	S																														T		T	T												S
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	R	L	A	W	F	T	V	V	L	P	S	L	T	L	N	Y	F	G	Q	G	A	L	L	L	K	N	P	E	A	I	K	N	P	F	F	L	L	A	P	D	W	A	L	I	P	L	L	I	I	A	A	L	A	T	V	I	A	S	Q	A	V	I	S	G	V	F	S	L	T	R	Q	A	V	R	L	G	Y	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	Q	P	K	E	L	I	R	L	F	R	L	G	F	P	V	A	A	A	L	F	F	E	V	T	L	F	A	V	V	A	L	L	V	A	P	L	G	S	T	V	V	A	A	H	Q	V	A	L	N	F	S	S	L	V	F	M	F	P	M	S	I	G	A	A	V	S	I	R	V	G	H	K	L	G	E	Q	D	T	K
Template Known Secondary structure		S	T	T	T	S	T	T	T	T																									T			S		S	T					T	T																											G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.				360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.
Query SS confidence																																								.	.	.
Query Sequence		S	P	M	R	I	I	H	T	S	E	M	E	S	G	Q	I	Y	I	P	F	V	N	W	M	L	Y	V	A	V	V	I	V	I	V	S	F	E	H	.	.	.	S	S	N	L	A	A	A	Y	G	I	A	V	T	G	T	M	V	L	T	S	I	L	S	T	T	V	A	R	Q	N	W	H	W	N	K	Y	F	V	A
Query Conservation																																								.	.	.
Alig confidence																																								.	.	.
Template Conservation
Template Sequence		G	A	A	I	A	A	N	V	G	L	M	T	G	L	A	T	A	C	I	T	A	L	L	T	V	L	F	R	E	Q	I	A	L	L	Y	T	E	N	Q	V	V	V	A	L	A	M	Q	L	L	L	F	A	A	I	Y	Q	C	M	D	A	V	Q	V	V	A	A	G	S	L	R	G	Y	K	D	M	T	A	I	F	H
Template Known Secondary structure		T	T	T	T																														T	S	S		S	S	T	T																													G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.									420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.
Query Sequence		L	I	L	I	A	F	L	C	V	D	I	P	L	F	T	A	N	L	D	K	L	.	.	.	.	.	.	.	.	L	S	G	G	W	L	P	L	S	L	G	T	V	M	F	I	V	M	T	T	W	K	S	E	R	F	R	L	L	R	R	M	H	E	H	G	N	S
Query Conservation																							.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	T	F	I	S	Y	W	V	L	G	L	P	T	G	Y	I	L	G	M	T	N	W	L	T	E	Q	P	L	G	A	K	G	F	W	L	G	F	I	I	G	L	S	A	A	A	L	M	L	G	Q	R	L	Y	W	L	Q	K	Q	S	D	D	V	Q	L	H	L	A
Template Known Secondary structure																							S	S	S			S																					T	G	G	G	S	T	T	T			S	S		T	T	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.