Job Description P63183 Confidence 99.51% Date Thu Jan 5 12:07:53 GMT 2012 Rank 2 Aligned Residues 393 % Identity 13% Template c3lrcC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1) Resolution 4.00 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	N	K	Q	S	L	P	A	I	T	L	A	A	I	G	V	V	Y	G	D	I	G	T	S	P	L	Y	T	L	R	E	C	L	S	G	Q	F	G	F	G	V	E	R	D	A	V	F	G	F	L	S	L	I	F	W	L	L	I	F	V	V	S	I	K	Y	L	T	F	V	M	R	A	D	N	A	G	E	G	G
Query Conservation
Alig confidence																						.	.	.	.																													.	.	.	.	.	.	.
Template Conservation																						.	.	.	.																													.	.	.	.	.	.	.
Template Sequence		D	A	H	K	V	G	L	I	P	V	T	L	M	V	S	G	N	I	M	G	.	.	.	.	S	G	V	F	L	L	P	A	N	L	A	S	T	G	G	I	A	I	Y	G	W	L	V	T	I	I	G	A	.	.	.	.	.	.	.	L	G	L	S	M	V	Y	A	K	M	S	F	L	D	P	S	P	G	G	S	Y
Template Known Secondary structure				S	S													T	T	S	S	.	.	.	.	S	S	T	T	T					T	T	S	S					S											.	.	.	.	.	.	.												T	T				S	S		T	T
Template Predicted Secondary structure																						.	.	.	.																													.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.					.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.								.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																																														.	.
Query SS confidence																																																														.	.
Query Sequence		I	L	T	L	M	S	L	A	G	R	N	T	S	A	R	T	T	S	M	L	V	I	M	G	L	I	G	G	S	F	F	Y	G	E	V	V	I	T	P	A	I	S	V	M	S	A	I	E	G	L	E	I	V	A	P	Q	L	D	T	W	.	.	I	V	P	L	S	I	I	V	L	T	L	L	F	M	I	Q	K	H
Query Conservation																																																														.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.																																														.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	Y	A	.	.	.	.	.	.	.	.	.	.	.	.	R	R	C	F	G	P	F	L	G	Y	Q	T	N	V	L	Y	W	L	A	C	W	I	G	N	I	A	M	V	V	I	G	V	G	Y	L	S	Y	F	F	P	I	L	K	D	P	L	V	L	T	I	T	C	V	V	V	L	W	I	F	V	L	L	N	I	V
Template Known Secondary structure		T	G	G	.	.	.	.	.	.	.	.	.	.	.	.	G	G	T	T														T	T	T	T											T	G	G	G	S	S	S	S					S	S	S																			S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		75	.	.													.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	A	M	V	G	K	L	F	A	P	I	M	L	T	W	F	L	I	L	A	G	L	G	L	R	S	I	I	A	N	P	E	V	L	H	A	L	N	P	M	W	A	V	H	F	F	L	E	Y	K	T	V	S	F	I	A	L	G	A	V	V	L	S	I	T	G	V	E	A	L	Y	A	D	M	G	H	F	G	K
Query Conservation
Alig confidence																																				.	.	.
Template Conservation																																				.	.	.
Template Sequence		G	P	K	M	I	T	R	V	Q	A	V	A	T	V	L	A	L	I	P	I	V	G	I	A	V	F	G	W	F	W	F	R	G	E	.	.	.	T	Y	M	A	A	W	N	V	S	G	L	G	T	F	G	A	I	Q	S	T	L	N	V	T	L	W	S	F	I	G	V	E	S	A	S	V	A	A	G	V	V	K	N
Template Known Secondary structure			S																												S			S	S	.	.	.							S		S	S	S						T								S	T	T		T	T	G	G	G					G	G	G	S	S	S
Template Predicted Secondary structure																																				.	.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.				.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		F	P	I	R	L	A	W	F	T	V	V	L	P	S	L	T	L	N	Y	F	G	Q	G	A	L	L	L	K	N	P	E	A	I	K	N	P	F	F	L	L	A	P	D	W	A	L	I	P	L	L	I	I	A	A	L	A	T	V	I	A	S	Q	A	V	I	S	G	V	F	S	L	T	R	Q	A	V	R	L	G	Y
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.
Template Sequence		P	K	R	N	V	P	I	A	T	I	G	G	V	L	I	A	A	V	C	Y	V	L	S	T	T	A	I	M	G	.	.	.	.	.	.	.	.	.	.	M	I	P	N	T	A	G	A	I	V	S	F	C	A	A	A	G	C	L	G	S	L	G	G	W	T	L	L	A	G	Q	T	A	K	A	A	A	D	D	G	L
Template Known Secondary structure																									T	T				S	.	.	.	.	.	.	.	.	.	.						T										T																T	T	S	S	T	T	T	S	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.											.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.						.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.
Query SS confidence																																						.	.	.	.	.
Query Sequence		L	S	P	M	R	I	I	H	T	S	E	M	E	S	G	Q	I	Y	I	P	F	V	N	W	M	L	Y	V	A	V	V	I	V	I	V	S	.	.	.	.	.	F	E	H	S	S	N	L	A	A	A	Y	G	I	A	V	T	G	T	M	V	L	T	S	I	L	S	T	T	V	A	R	Q	N	W	H	W	N	K	Y
Query Conservation																																						.	.	.	.	.
Alig confidence					.	.	.	.																														.	.	.	.	.
Template Conservation					.	.	.	.
Template Sequence		F	P	P	.	.	.	.	I	F	A	R	V	N	K	A	G	T	P	V	A	G	L	I	I	V	G	I	L	M	T	I	F	Q	L	S	S	I	S	P	N	A	T	K	E	F	G	L	V	S	S	V	S	V	I	F	T	L	V	P	Y	L	Y	T	C	A	A	L	L	L	L	G	H	G	H	F	G	K	A	R	P
Template Known Secondary structure		S			.	.	.	.							S	S	S	S																	T	T	S	S	S		S	S	S	S	S			S	S	T	T						T	T													T		T	T		S	S	S
Template Predicted Secondary structure					.	.	.	.
Template SS confidence
		310	.	.					.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	A	L	I	L	I	A	F	L	C	V	D	I	P	L	F	T	A	N	L	D	K	L	L	S	G	G	W	L	P	L	S	L	G	T	V	M	F	I	V	M	T	T	W	K	S
Query Conservation
Alig confidence																				.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.
Template Sequence		A	Y	L	A	V	T	T	I	A	F	L	Y	C	I	W	A	V	V	.	.	.	.	.	.	.	G	S	G	A	K	E	V	M	W	S	F	V	T	L	M	V	I	T	A	M	Y	A
Template Known Secondary structure																				.	.	.	.	.	.	.	S	S																		T	T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.								.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.