Job Description P63183 Confidence 99.83% Date Thu Jan 5 12:07:53 GMT 2012 Rank 1 Aligned Residues 419 % Identity 13% Template c3giaA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter Resolution 2.32 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	N	K	Q	S	L	P	A	I	T	L	A	A	I	G	V	V	Y	G	D	I	G	T	S	P	L	Y	T	L	R	E	C	L	S	G	Q	F	G	F	G	V	E	R	D	A	V	F	G	F	L	S	L	I	F	W	L	L	I	F	V	V	S	I	K	Y	L	T	F	V	M	R	A	D	N	A	G	E	G	G
Query Conservation
Alig confidence																				.	.	.																																.	.	.	.	.	.	.
Template Conservation																				.	.	.																																.	.	.	.	.	.	.
Template Sequence		K	N	K	K	L	S	L	W	E	A	V	S	M	A	V	G	V	M	.	.	.	I	G	A	S	I	F	S	I	F	G	V	G	A	K	I	A	G	R	N	L	P	E	T	F	I	L	S	G	I	Y	A	.	.	.	.	.	.	.	L	L	V	A	Y	S	Y	T	K	L	G	A	K	I	V	S	N	A	G	P	I
Template Known Secondary structure						B														.	.	.					T	T	T	S									G	G	G													.	.	.	.	.	.	.												T	T				T	T	T
Template Predicted Secondary structure																				.	.	.																																.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.				.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.								.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																																														.	.
Query SS confidence																																																														.	.
Query Sequence		I	L	T	L	M	S	L	A	G	R	N	T	S	A	R	T	T	S	M	L	V	I	M	G	L	I	G	G	S	F	F	Y	G	E	V	V	I	T	P	A	I	S	V	M	S	A	I	E	G	L	E	I	V	A	P	Q	L	D	T	W	.	.	I	V	P	L	S	I	I	V	L	T	L	L	F	M	I	Q	K	H
Query Conservation																																																														.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.																																							.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	F	I	H	K	A	I	G	D	N	I	.	.	.	.	.	.	.	.	.	.	.	I	T	G	A	L	S	I	L	L	W	M	S	Y	V	I	S	I	A	L	F	A	K	G	F	A	G	Y	F	L	P	L	I	N	A	P	I	N	T	F	N	I	A	I	T	E	I	G	I	V	A	F	F	T	A	L	N	F	F
Template Known Secondary structure										S	S		.	.	.	.	.	.	.	.	.	.	.																																T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.												.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	A	M	V	G	K	L	F	A	P	I	M	L	T	W	F	L	I	L	A	G	L	G	L	R	S	I	I	A	N	P	E	V	L	H	A	L	N	P	M	W	A	V	H	F	F	L	E	Y	K	T	V	S	F	I	A	L	G	A	V	V	L	S	I	T	G	V	E	A	L	Y	A	D	M	G	H	F	G	K
Query Conservation
Alig confidence																																										.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.
Template Sequence		G	S	K	A	V	G	R	A	E	F	F	I	V	L	V	K	L	L	I	L	G	L	F	I	F	A	G	L	I	T	I	H	P	S	Y	V	I	P	D	L	.	.	.	.	.	.	A	P	S	A	V	S	G	M	I	F	A	S	A	I	F	F	L	S	Y	M	G	F	G	V	I	T	N	A	S	E	H	I	E	N
Template Known Secondary structure		T																																G	G	G	T	S				.	.	.	.	.	.	S														G	G	G	G	G	T							T	T	G	G	G	B	S	S
Template Predicted Secondary structure																																										.	.	.	.	.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.							.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		241			.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.										.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.																																.	.	.	.	.	.	.	.	.
Query SS confidence			.	.																																.	.	.	.	.	.	.	.	.
Query Sequence		F	.	.	P	I	R	L	A	W	F	T	V	V	L	P	S	L	T	L	N	Y	F	G	Q	G	A	L	L	L	K	N	P	E	A	.	.	.	.	.	.	.	.	.	I	K	N	P	F	F	L	L	A	P	D	W	A	L	I	P	L	L	I	I	A	A	L	A	T	V	I	A	S	Q	A	V	I	S	G	V	F
Query Conservation			.	.																																.	.	.	.	.	.	.	.	.
Alig confidence			.	.																																.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	K	K	N	V	P	R	A	I	F	I	S	I	L	I	V	M	F	V	Y	V	G	V	A	I	S	A	I	G	N	L	P	I	D	E	L	I	K	A	S	E	N	A	L	A	V	A	A	K	P	F	L	G	N	L	G	F	L	L	I	S	I	G	A	L	F	S	I	S	S	A	M	N	A	T	I	Y	G	G	A
Template Known Secondary structure																														T	T	S								T	G	G	G																																			T	T	T
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	T	R	Q	A	V	R	L	G	Y	L	S	P	M	R	I	I	H	T	S	E	M	E	S	G	Q	I	Y	I	P	F	V	N	W	M	L	Y	V	A	V	V	I	V	I	V	S	F	E	H	S	S	N	L	A	A	A	Y	G	I	A	V	T	G	T	M	V	L	T	S	I	L	S	T	T	V	A	R	Q	N
Query Conservation
Alig confidence																.	.	.	.										.	.	.
Template Conservation																.	.	.	.										.	.	.
Template Sequence		N	V	A	Y	S	L	A	K	D	G	E	L	P	E	.	.	.	.	F	F	E	R	K	V	W	F	K	.	.	.	S	T	E	G	L	Y	I	T	S	A	L	G	V	L	F	A	L	L	F	N	M	E	G	V	A	S	I	T	S	A	V	F	M	V	I	Y	L	F	V	I	L	S	H	Y	I	L	I	D	E	V
Template Known Secondary structure											S	S			S	.	.	.	.	S			T	T	S			S	.	.	.		T																	S																											T
Template Predicted Secondary structure																.	.	.	.										.	.	.
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310					.	.	.	.	.	.	.	.	.				320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	H	W	N	K	Y	F	V	A	L	I	L	I	A	F	L	C	V	D	I	P	L	F	T	A	N	L	D	K	L	L	S	G	G	W	L	P	L	S	L	G	T	V	M	F	I	V	M	T	T	W	K	S	E	R	F	R	L	L	R	R	M	H	E	H	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	G	R	K	E	I	V	I	F	S	F	I	V	V	L	G	V	F	L	L	L	L	Y	Y	Q	W	I	T	N	R	F	V	F	Y	G	I	I	A	T	F	I	G	V	L	I	F	E	I	I	Y	R	K	V	T	K	R	T	F	S	N	N	M	Y	V	K	S
Template Known Secondary structure																																																													G	G	G	T	T	T
Template Predicted Secondary structure
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.