Job Description P63183 Confidence 99.07% Date Thu Jan 5 12:07:53 GMT 2012 Rank 3 Aligned Residues 421 % Identity 11% Template c2jlnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Resolution 2.85 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	N	K	Q	S	L	P	A	I	T	L	A	A	I	G	V	V	Y	G	D	I	G	T	S	P	L	Y	T	L	R	E	C	L	S	G	Q	F	G	F	G	V	E	R	D	A	V	F	G	F	L	S	L	I	F	W	L	L	I	F	V	V	S	I	K	Y	L	T	F	V	M	R	A	D	N	A	G	E	G	G
Query Conservation
Alig confidence																				.																			.	.	.															.	.	.																		.	.
Template Conservation																				.																			.	.	.															.	.	.																		.	.
Template Sequence		R	Y	A	E	R	S	V	G	P	F	S	L	A	A	I	W	F	A	.	M	A	I	Q	V	A	I	F	I	A	A	G	Q	M	T	S	S	F	.	.	.	Q	V	W	Q	V	I	V	A	I	A	A	G	C	T	.	.	.	I	A	V	I	L	L	F	F	T	Q	S	A	A	I	R	W	G	.	.	I	N	F	T
Template Known Secondary structure			G	G	G			B												.				S	T										T	T	T	S	.	.	.															.	.	.										T								.	.
Template Predicted Secondary structure																				.																			.	.	.															.	.	.																		.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.				.	.	.	60	.	.	.	.	.	.	.	.	.	70				.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.			.	.	90	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																																											.	.
Query SS confidence																																																											.	.
Query Sequence		I	L	T	L	M	S	L	A	G	R	N	T	S	A	R	T	T	S	M	L	V	I	M	G	L	I	G	G	S	F	F	Y	G	E	V	V	I	T	P	A	I	S	V	M	S	A	I	E	G	L	E	I	V	A	P	Q	L	.	.	D	T	W	I	V	P	L	S	I	I	V	L	T	L	L	F	M	I	Q	K	H
Query Conservation																																																											.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.																																											.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	A	A	.	.	.	.	.	.	.	.	.	.	.	.	R	M	P	F	G	I	R	G	S	L	I	P	I	T	L	K	A	L	L	S	L	F	W	F	G	F	Q	T	W	L	G	A	L	A	L	D	E	I	T	R	L	L	T	G	F	T	N	L	P	L	W	I	V	I	F	G	A	I	Q	V	V	T	T	F	Y
Template Known Secondary structure				T	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	S		T	T	T	T																																																							T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		92	.	.													.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	A	M	V	G	K	L	F	A	P	I	M	L	T	W	F	L	I	L	A	G	L	G	L	R	S	I	I	A	N	P	E	V	L	H	A	L	N	P	M	W	A	V	H	F	F	L	E	Y	K	T	V	S	F	I	A	L	G	A	V	V	L	S	I	T	G	V	E	A	L	Y	A	D	M	G	H	F	G	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I	T	F	I	R	W	M	N	V	F	A	S	P	V	L	L	A	M	G	V	Y	M	V	Y	L	M	L	D	G	A	D	V	S	L	G	E	V	M	S	M	G	G	E	N	P	G	M	P	F	S	T	A	I	M	I	F	V	G	G	W	I	A	V	V	V	S	I	H	D	I	V	K	E	C	K	V	D	P	N
Template Known Secondary structure																																	T							T	T				S	S			S											T	T	T					T	T	T					T	T	B				T	T
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		241	.											.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.
Query Sequence		F	P	.	.	.	.	.	.	.	.	.	.	I	R	L	A	W	F	T	V	V	L	P	S	L	T	L	N	Y	F	G	Q	G	A	L	L	L	K	N	P	E	A	I	K	N	P	F	F	L	L	A	P	D	W	A	L	I	P	L	L	I	I	A	A	L	A	T	V	I	A	S	Q	A	V	I	S	G	V	F	S
Query Conservation				.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	S	R	E	G	Q	T	K	A	D	A	R	Y	A	T	A	Q	W	L	G	M	V	P	A	S	I	I	F	G	F	I	G	A	A	S	M	V	L	V	G	E	W	N	P	V	I	A	I	T	E	V	V	G	G	V	S	I	P	M	A	I	L	F	Q	V	F	V	L	L	A	T	W	S	T	N	P	A	A	N	L
Template Known Secondary structure																																									S		S											T																				T	T						T
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	R	Q	A	V	R	L	G	Y	L	S	P	M	R	I	I	H	T	S	E	M	E	S	G	Q	I	Y	I	P	F	V	N	W	M	L	Y	V	A	V	V	I	V	I	V	S	F	E	H	S	S	N	L	A	A	A	Y	G	I	A	V	T	G	T	M	V	L	T	S	I	L	S	T	T	V	A	R	Q	N	W
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	S	P	A	Y	T	L	C	S	T	F	P	R	V	F	.	.	.	.	.	.	.	.	.	.	.	.	.	T	F	K	T	G	V	I	V	S	A	V	V	G	L	L	M	M	P	W	Q	F	A	G	V	L	N	T	F	L	N	L	L	A	S	A	L	G	P	L	A	G	I	M	I	S	D	Y	F	L	V	R	R
Template Known Secondary structure												S	T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.																T		G	G	G	T														T	T													T	T	S	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.														.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
		391	.	.	.	.	.												.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	W	N	K	Y	F	.	.	.	.	.	.	.	.	.	.	.	V	A	L	I	L	I	A	F	L	C	V	D	I	P	L	F	T	A	N	L	D	K	L	L	S	G	G	W	L	P	L	S	L	G	T	V	M	F	I	V	M	T	T	W	K	S	E	R	F	R	L	L	R	R	M	H	E	H	G	N	S
Query Conservation								.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	R	I	S	L	H	D	L	Y	R	T	K	G	I	Y	T	Y	W	R	G	V	N	W	V	A	L	A	V	Y	A	V	A	L	A	V	S	F	L	T	P	D	L	M	F	V	T	G	L	I	A	A	L	L	L	H	I	P	A	M	R	W	V	A	K	T	F	P	L	F	S	E	A	E	S	R	N	E	D
Template Known Secondary structure		T								T	B	S	S	S	T	T		T	B	T	T	B																	T		G	G	G																					T	T	T	S		S			G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.