Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	A	F	D	L	H	R	M	A	F	D	K	V	P	F	D	F	L	G	E	V	A	L	R	S	L	Y	T	F	V	L	V	F	L	F	L	K	M	T	G	R	R	G	V	R	Q	M	S	L	F	E	V	L	I	I	L	T	L	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	A	A	G	D	V	A	F	Y	D	D	V	P	M	V	P	V	L	I	V	F	I	T	L	A	L	L	Y	R	L	V	M	W	L	M	A	H	S	E	K	L	E	D	L	L	E	G	K	P	V	V	I	I	E	D	G	E	L	A	W
Secondary structure
SS confidence
Disorder											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	K	L	N	N	S	N	M	T	E	F	E	F	F	M	E	L	R	L	R	G	V	E	Q	L	G	Q	V	R	L	A	I	L	E	T	N	G	Q	I	S	V	Y	F	F	E	D	D	K	V	K	P	G	L	L	I	L	P	S	D	C
Secondary structure
SS confidence
Disorder							?	?	?	?											?	?	?																							?	?	?	?	?	?	?	?	?		?	?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Sequence		T	Q	R	Y	K	V	V	P	E	S	A	D	Y	A	C	I	R	C	S	E	I	I	H	M	K	A	G	E	K	Q	L	C	P	R	C	A	N	P	E	W	T	K	A	S	R	A	K	R	V	T
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?																?								?	?	?	?											?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3c6f chain D Region: 109 - 228 Aligned: 108 Modelled: 120 Confidence: 100.0% Identity: 23% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:yetf protein; PDBTitle: crystal structure of protein bsu07140 from bacillus subtilis Phyre2 PDB 1yuz chain B Region: 178 - 217 Aligned: 38 Modelled: 40 Confidence: 53.2% Identity: 21% PDB header:oxidoreductase Chain: B: PDB Molecule:nigerythrin; PDBTitle: partially reduced state of nigerythrin Phyre2 PDB 2guk chain A domain 1 Region: 35 - 60 Aligned: 26 Modelled: 23 Confidence: 43.5% Identity: 15% Fold: PG1857-like Superfamily: PG1857-like Family: PG1857-like Phyre2 PDB 2hr5 chain B Region: 183 - 217 Aligned: 33 Modelled: 35 Confidence: 39.3% Identity: 18% PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form Phyre2 PDB 2e74 chain D domain 2 Region: 40 - 62 Aligned: 23 Modelled: 23 Confidence: 37.8% Identity: 26% Fold: Single transmembrane helix Superfamily: ISP transmembrane anchor Family: ISP transmembrane anchor Phyre2 PDB 2znm chain A Region: 105 - 141 Aligned: 33 Modelled: 37 Confidence: 33.9% Identity: 21% PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: oxidoreductase nmdsba3 from neisseria meningitidis Phyre2 PDB 3dvw chain A Region: 105 - 141 Aligned: 36 Modelled: 37 Confidence: 33.2% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: crystal structure of reduced dsba1 from neisseria2 meningitidis Phyre2 PDB 3gv1 chain A Region: 105 - 140 Aligned: 31 Modelled: 36 Confidence: 30.2% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:disulfide interchange protein; PDBTitle: crystal structure of disulfide interchange protein from neisseria2 gonorrhoeae Phyre2 PDB 1dvb chain A Region: 190 - 217 Aligned: 27 Modelled: 28 Confidence: 27.0% Identity: 26% PDB header:electron transport Chain: A: PDB Molecule:rubrerythrin; PDBTitle: rubrerythrin Phyre2 PDB 1fvk chain A Region: 105 - 139 Aligned: 34 Modelled: 35 Confidence: 25.5% Identity: 15% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: DsbA-like Phyre2 PDB 2knc chain A Region: 63 - 103 Aligned: 41 Modelled: 41 Confidence: 25.3% Identity: 15% PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex Phyre2 PDB 3l9v chain E Region: 105 - 137 Aligned: 32 Modelled: 33 Confidence: 24.9% Identity: 16% PDB header:oxidoreductase Chain: E: PDB Molecule:putative thiol-disulfide isomerase or thioredoxin; PDBTitle: crystal structure of salmonella enterica serovar typhimurium srga Phyre2 PDB 1e42 chain A domain 2 Region: 111 - 146 Aligned: 36 Modelled: 36 Confidence: 20.7% Identity: 19% Fold: Subdomain of clathrin and coatomer appendage domain Superfamily: Subdomain of clathrin and coatomer appendage domain Family: Clathrin adaptor appendage, alpha and beta chain-specific domain Phyre2 PDB 1z6m chain A domain 1 Region: 105 - 139 Aligned: 29 Modelled: 30 Confidence: 19.5% Identity: 21% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: DsbA-like Phyre2 PDB 1un2 chain A Region: 105 - 137 Aligned: 32 Modelled: 33 Confidence: 18.5% Identity: 16% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: DsbA-like Phyre2 PDB 2fwh chain A domain 1 Region: 105 - 140 Aligned: 36 Modelled: 36 Confidence: 18.2% Identity: 22% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Thioltransferase Phyre2 PDB 1eej chain A domain 1 Region: 105 - 140 Aligned: 31 Modelled: 36 Confidence: 18.1% Identity: 23% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: DsbC/DsbG C-terminal domain-like Phyre2 PDB 2k1a chain A Region: 65 - 103 Aligned: 39 Modelled: 39 Confidence: 17.9% Identity: 15% PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment Phyre2 PDB 1y5i chain B domain 1 Region: 115 - 147 Aligned: 33 Modelled: 33 Confidence: 17.0% Identity: 18% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 2r77 chain A Region: 134 - 185 Aligned: 50 Modelled: 52 Confidence: 15.9% Identity: 14% PDB header:lipid binding protein Chain: A: PDB Molecule:phosphatidylethanolamine-binding protein, putative; PDBTitle: crystal structure of phosphatidylethanolamine-binding protein,2 pfl0955c, from plasmodium falciparum Phyre2 1 c3c6fD_ 2 c1yuzB_ 3 d2guka1 4 c2hr5B_ 5 d2e74d2 6 c2znmA_ 7 c3dvwA_ 8 c3gv1A_ 9 c1dvbA_ 10 d1fvka_ 11 c2kncA_ 12 c3l9vE_ 13 d1e42a2 14 d1z6ma1 15 d1un2a_ 16 d2fwha1 17 d1eeja1 18 c2k1aA_ 19 d1y5ib1 20 c2r77A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3c6fD_ 100.0 23 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:yetf protein; PDBTitle: crystal structure of protein bsu07140 from bacillus subtilis 2 c1yuzB_ 53.2 21 PDB header:oxidoreductase Chain: B: PDB Molecule:nigerythrin; PDBTitle: partially reduced state of nigerythrin 3 d2guka1 43.5 15 Fold:PG1857-like Superfamily:PG1857-like Family:PG1857-like 4 c2hr5B_ 39.3 18 PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form 5 d2e74d2 37.8 26 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 6 c2znmA_ 33.9 21 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: oxidoreductase nmdsba3 from neisseria meningitidis 7 c3dvwA_ 33.2 19 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: crystal structure of reduced dsba1 from neisseria2 meningitidis 8 c3gv1A_ 30.2 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:disulfide interchange protein; PDBTitle: crystal structure of disulfide interchange protein from neisseria2 gonorrhoeae 9 c1dvbA_ 27.0 26 PDB header:electron transport Chain: A: PDB Molecule:rubrerythrin; PDBTitle: rubrerythrin 10 d1fvka_ 25.5 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 11 c2kncA_ 25.3 15 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 12 c3l9vE_ 24.9 16 PDB header:oxidoreductase Chain: E: PDB Molecule:putative thiol-disulfide isomerase or thioredoxin; PDBTitle: crystal structure of salmonella enterica serovar typhimurium srga 13 d1e42a2 20.7 19 Fold:Subdomain of clathrin and coatomer appendage domain Superfamily:Subdomain of clathrin and coatomer appendage domain Family:Clathrin adaptor appendage, alpha and beta chain-specific domain 14 d1z6ma1 19.5 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 15 d1un2a_ 18.5 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 16 d2fwha1 18.2 22 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 17 d1eeja1 18.1 23 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbC/DsbG C-terminal domain-like 18 c2k1aA_ 17.9 15 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment 19 d1y5ib1 17.0 18 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 20 c2r77A_ 15.9 14 PDB header:lipid binding protein Chain: A: PDB Molecule:phosphatidylethanolamine-binding protein, putative; PDBTitle: crystal structure of phosphatidylethanolamine-binding protein,2 pfl0955c, from plasmodium falciparum 21 c3kzqE_ not modelled 15.5 6 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:putative uncharacterized protein vp2116; PDBTitle: the crystal structure of the protein with unknown function from vibrio2 parahaemolyticus rimd 2210633 22 c3feuA_ not modelled 15.4 13 PDB header:oxidoreductase Chain: A: PDB Molecule:putative lipoprotein; PDBTitle: crystal structure of dsba-like thioredoxin domain vf_a0457 from vibrio2 fischeri 23 c1t3bA_ not modelled 15.0 19 PDB header:isomerase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc; PDBTitle: x-ray structure of dsbc from haemophilus influenzae 24 d2ewha1 not modelled 14.5 23 Fold:Ferredoxin-like Superfamily:CcmK-like Family:CcmK-like 25 c3hd5A_ not modelled 13.7 16 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: crystal structure of a thiol:disulfide interchange protein2 dsba from bordetella parapertussis 26 c1jzdA_ not modelled 13.6 23 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc; PDBTitle: dsbc-dsbdalpha complex 27 d1t3ba1 not modelled 13.5 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbC/DsbG C-terminal domain-like 28 d1iwga5 not modelled 12.6 12 Fold:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Superfamily:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Family:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 29 d1d4oa_ not modelled 11.8 19 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Transhydrogenase domain III (dIII) 30 c1pt9B_ not modelled 11.8 19 PDB header:oxidoreductase Chain: B: PDB Molecule:nad(p) transhydrogenase, mitochondrial; PDBTitle: crystal structure analysis of the diii component of transhydrogenase2 with a thio-nicotinamide nucleotide analogue 31 c3gmfA_ not modelled 11.7 21 PDB header:oxidoreductase Chain: A: PDB Molecule:protein-disulfide isomerase; PDBTitle: crystal structure of protein-disulfide isomerase from novosphingobium2 aromaticivorans 32 d1pnoa_ not modelled 11.5 26 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Transhydrogenase domain III (dIII) 33 d1aipc1 not modelled 11.2 16 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 34 d1dl6a_ not modelled 10.6 13 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 35 c3h93A_ not modelled 10.4 21 PDB header:transcription regulator Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: crystal structure of pseudomonas aeruginosa dsba 36 d1beda_ not modelled 10.4 22 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 37 c2eelA_ not modelled 10.4 14 PDB header:apoptosis Chain: A: PDB Molecule:cell death activator cide-a; PDBTitle: solution structure of the cide-n domain of human cell death2 activator cide-a 38 c2bruC_ not modelled 10.0 30 PDB header:oxidoreductase Chain: C: PDB Molecule:nad(p) transhydrogenase subunit beta; PDBTitle: complex of the domain i and domain iii of escherichia coli2 transhydrogenase 39 c3gykC_ not modelled 9.8 10 PDB header:oxidoreductase Chain: C: PDB Molecule:27kda outer membrane protein; PDBTitle: the crystal structure of a thioredoxin-like oxidoreductase from2 silicibacter pomeroyi dss-3 40 d1ppva_ not modelled 9.6 12 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 41 d2cp9a1 not modelled 9.2 21 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 42 d1pfta_ not modelled 9.2 14 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 43 d1lkoa2 not modelled 9.0 30 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 44 d1ckma1 not modelled 8.7 26 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA ligase/mRNA capping enzyme postcatalytic domain 45 c3fz5C_ not modelled 8.6 23 PDB header:isomerase Chain: C: PDB Molecule:possible 2-hydroxychromene-2-carboxylate isomerase; PDBTitle: crystal structure of possible 2-hydroxychromene-2-carboxylate2 isomerase from rhodobacter sphaeroides 46 d1thta_ not modelled 8.4 13 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Thioesterases 47 d1ibxa_ not modelled 8.4 25 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:CAD domain 48 d1xb2b1 not modelled 8.3 21 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 49 d1yuza2 not modelled 8.0 32 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 50 d2fwua1 not modelled 7.9 18 Fold:Immunoglobulin-like beta-sandwich Superfamily:CalX-like Family:CalX-beta domain 51 c2d7cD_ not modelled 7.8 8 PDB header:protein transport Chain: D: PDB Molecule:rab11 family-interacting protein 3; PDBTitle: crystal structure of human rab11 in complex with fip3 rab-2 binding domain 52 d1efub3 not modelled 7.7 32 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 53 c3gn3B_ not modelled 7.7 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative protein-disulfide isomerase; PDBTitle: crystal structure of a putative protein-disulfide isomerase from2 pseudomonas syringae to 2.5a resolution. 54 d1h6za3 not modelled 7.6 9 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:Pyruvate phosphate dikinase, N-terminal domain 55 d2i5ia1 not modelled 7.5 16 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:YdjC-like 56 d1t5la1 not modelled 7.5 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 57 d2b2na1 not modelled 7.4 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 58 c3kcmC_ not modelled 7.4 17 PDB header:oxidoreductase Chain: C: PDB Molecule:thioredoxin family protein; PDBTitle: the crystal structure of thioredoxin protein from geobacter2 metallireducens 59 d1d4ba_ not modelled 7.3 24 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:CAD domain 60 d1nnqa2 not modelled 7.3 31 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 61 d1zd0a1 not modelled 7.2 18 Fold:PF0523-like Superfamily:PF0523-like Family:PF0523-like 62 d2fi0a1 not modelled 7.2 8 Fold:SP0561-like Superfamily:SP0561-like Family:SP0561-like 63 d2h7aa1 not modelled 7.2 17 Fold:YcgL-like Superfamily:YcgL-like Family:YcgL-like 64 c3bciA_ not modelled 7.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:disulfide bond protein a; PDBTitle: crystal structure of staphylococcus aureus dsba 65 d2odka1 not modelled 6.8 25 Fold:YefM-like Superfamily:YefM-like Family:YefM-like 66 d1meka_ not modelled 6.7 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 67 d2gmga1 not modelled 6.6 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PF0610-like 68 c3rcqA_ not modelled 6.6 10 PDB header:oxidoreductase Chain: A: PDB Molecule:aspartyl/asparaginyl beta-hydroxylase; PDBTitle: crystal structure of human aspartate beta-hydroxylase isoform a 69 c2ivwA_ not modelled 6.5 18 PDB header:lipoprotein Chain: A: PDB Molecule:pilp pilot protein; PDBTitle: the solution structure of a domain from the neisseria2 meningitidis pilp pilot protein. 70 c2odkD_ not modelled 6.4 25 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein; PDBTitle: putative prevent-host-death protein from nitrosomonas europaea 71 c2x5rA_ not modelled 6.3 27 PDB header:viral protein Chain: A: PDB Molecule:hypothetical protein orf126; PDBTitle: crystal structure of the hypothetical protein orf126 from2 pyrobaculum spherical virus 72 c1ngmB_ not modelled 6.2 23 PDB header:transcription/dna Chain: B: PDB Molecule:transcription factor iiib brf1 subunit; PDBTitle: crystal structure of a yeast brf1-tbp-dna ternary complex 73 c2jugB_ not modelled 6.1 20 PDB header:biosynthetic protein Chain: B: PDB Molecule:tubc protein; PDBTitle: multienzyme docking in hybrid megasynthetases 74 d1szpb1 not modelled 6.1 29 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 75 d1cy5a_ not modelled 6.0 5 Fold:DEATH domain Superfamily:DEATH domain Family:Caspase recruitment domain, CARD 76 c2kvsA_ not modelled 5.6 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mw0776; PDBTitle: nmr solution structure of q7a1e8 protein from staphylococcus2 aureus: northeast structural genomics consortium target:3 zr215 77 c1b22A_ not modelled 5.6 22 PDB header:dna binding protein Chain: A: PDB Molecule:dna repair protein rad51; PDBTitle: rad51 (n-terminal domain) 78 d1b22a_ not modelled 5.6 22 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 79 c3c7mB_ not modelled 5.6 25 PDB header:oxidoreductase Chain: B: PDB Molecule:thiol:disulfide interchange protein dsba-like; PDBTitle: crystal structure of reduced dsbl 80 c1xtzA_ not modelled 5.5 10 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase; PDBTitle: crystal structure of the s. cerevisiae d-ribose-5-phosphate isomerase:2 comparison with the archeal and bacterial enzymes 81 c3ghaA_ not modelled 5.5 10 PDB header:oxidoreductase Chain: A: PDB Molecule:disulfide bond formation protein d; PDBTitle: crystal structure of etda-treated bdbd (reduced) 82 d1hyua4 not modelled 5.5 25 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 83 c1e3hA_ not modelled 5.4 26 PDB header:polyribonucleotide transferase Chain: A: PDB Molecule:guanosine pentaphosphate synthetase; PDBTitle: semet derivative of streptomyces antibioticus pnpase/gpsi2 enzyme 84 c2jqeA_ not modelled 5.3 6 PDB header:signaling protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: soution structure of af54 m-domain 85 c3hryA_ not modelled 5.3 35 PDB header:antitoxin Chain: A: PDB Molecule:prevent host death protein; PDBTitle: crystal structure of phd in a trigonal space group and partially2 disordered 86 d1wpxb1 not modelled 5.1 13 Fold:PEBP-like Superfamily:PEBP-like Family:Phosphatidylethanolamine binding protein 87 d1iwga6 not modelled 5.1 9 Fold:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Superfamily:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Family:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 88 c2oarA_ not modelled 5.1 12 PDB header:membrane protein Chain: A: PDB Molecule:large-conductance mechanosensitive channel; PDBTitle: mechanosensitive channel of large conductance (mscl)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0