Job Description P00962 Confidence 99.65% Date Thu Jan 5 10:57:24 GMT 2012 Rank 26 Aligned Residues 256 % Identity 14% Template c3tqoA_ PDB info PDB header:ligase Chain: A: PDB Molecule:cysteinyl-trna synthetase; PDBTitle: structure of the cysteinyl-trna synthetase (cyss) from coxiella2 burnetii. Resolution 2.30 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.						.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.														.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	E	P	N	G	Y	L	H	I	G	H	A	K	S	I	C	L	N	F	G	I	A	Q	.	.	.	.	.	D	Y	K	G	Q	C	N	L	R	F	D	D	T	N	P	V	K	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	I	E	Y	V	E	S	I	K	N	D	V	E	W	L	G	F	H	W	S	G
Query Conservation																									.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	T	V	Y	D	Y	X	H	I	G	H	G	R	S	W	I	I	F	D	X	V	V	R	Y	L	R	X	R	G	Y	E	V	T	F	V	R	N	I	T	D	I	D	D	K	I	I	K	R	A	G	E	N	K	E	S	P	A	A	L	A	E	R	F	I	Q	I	L	H	E	D	E	K	A	L	R	V	L	S	P	D
Template Known Secondary structure			B	T	T	S			B																				T	T									B	B													T	T	S																					T					S
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	R	Y	S	S	D	Y	F	D	Q	L	H	A	Y	A	I	E	L	I	N	K	G	L	A	Y	V	D	E	L	T	P	E	Q	I	R	E	Y	R	G	T	L	T	Q	P	G	K	N	S	P	Y	R	D	R	S	V	E	E	N	L	A	L	F	E	K	M	R	A	G	G	F	E	E	G	K	A	C	L	R	A
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	E	P	R	A	T	Q	Y	V	P	E	I	I	K	L	I	Q	K	L	L	D	N	Q	Y	A	Y	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Q	N	G	D	V	F	F	D	V	R	R	F	K	D	Y	G	K	L	S	H	R	H	L	D	S	K	R	D	P	L	D	F	V	L	W	K
Template Known Secondary structure		B			B	G	G	G																T	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S						T	T	T		T	T	T	T	T	T	T	T		S					S	S	T	T
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.																	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		K	I	D	M	A	S	P	F	I	V	M	R	D	P	V	L	Y	R	I	K	F	A	E	H	H	Q	T	G	N	K	W	C	I	Y	P	M	Y	D	F	T	H	C	I	S	D	A	L	E	G	I	T	H	S	L	C	T	L	E	F	Q	D	N	R	R	L	Y	D	W	V	L	D	N	I	T	I	P	V	H	P	.
Query Conservation																																																																																	.
Alig confidence														.	.	.	.	.	.	.																																		.	.	.	.	.	.																						.
Template Conservation														.	.	.	.	.	.	.																																		.	.	.	.	.	.
Template Sequence		K	A	K	P	G	E	P	K	W	D	S	P	.	.	.	.	.	.	.	W	G	E	G	R	P	G	W	H	I	E	C	S	A	X	S	S	S	I	L	G	Q	P	F	D	I	H	G	G	G	L	D	L	.	.	.	.	.	.	K	F	P	H	H	E	N	E	I	A	Q	S	E	A	G	E	E	K	P	F	V	K
Template Known Secondary structure					T	T	S			B			T	.	.	.	.	.	.	.	T		S																			S	S								G	G	G	.	.	.	.	.	.	T	T	T														S	S
Template Predicted Secondary structure														.	.	.	.	.	.	.																																		.	.	.	.	.	.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.								.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.							.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	Y	E	F	S	R	L	N	L	E	Y	T	V	M	S	K	R	K	L	N	L	L	V	T	D	K	H	V	E	G	W	D	D	P	R	M	P	T	I	S	G	L	R	R	R	G	Y	T	A	A	S	I	R	E	F	C	K	R	I	G	V	T	K	Q	D	N	T	I	E	M	A	S	L	E	S	C	I	R	E
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.																		.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.																		.
Template Sequence		L	W	X	H	A	G	L	L	E	I	N	K	E	K	X	S	K	S	L	G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	I	S	I	R	E	A	L	K	E	.	S	D	V	E	V	L	R	Y	F	L	L	S	G	H	Y	R	N	.	P	L	S	Y	S	K	E	N	L	E	N	G	R	L	A
Template Known Secondary structure												T	T					T	T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			B								.	S												S		T	T	S	.
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.																		.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.																.	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		335
Predicted Secondary structure
Query SS confidence
Query Sequence		D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		317

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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