Job Description P00962 Confidence 99.93% Date Thu Jan 5 10:57:24 GMT 2012 Rank 17 Aligned Residues 234 % Identity 18% Template c3sp1B_ PDB info PDB header:ligase Chain: B: PDB Molecule:cysteinyl-trna synthetase; PDBTitle: crystal structure of cysteinyl-trna synthetase (cyss) from borrelia2 burgdorferi Resolution 2.55 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.						.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.					.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																											.	.	.	.	.																						.	.	.	.
Query SS confidence																											.	.	.	.	.																						.	.	.	.
Query Sequence		P	P	E	P	N	G	Y	L	H	I	G	H	A	K	S	I	C	L	N	F	G	I	A	Q	D	.	.	.	.	.	Y	K	G	Q	C	N	L	R	F	D	D	T	N	P	V	K	E	D	I	E	Y	.	.	.	.	V	E	S	I	K	N	D	V	E	W	L	G	F	H	W	S	G	N	V	R	Y	S	S	D	Y
Query Conservation																											.	.	.	.	.																						.	.	.	.
Alig confidence																											.	.	.	.	.																						.	.	.	.
Template Conservation
Template Sequence		G	P	T	V	Y	N	Y	A	H	I	G	N	F	R	T	Y	I	F	G	D	L	L	I	K	T	L	R	F	L	G	Y	K	V	N	Y	A	M	N	I	T	D	I	G	H	G	L	T	V	Y	E	I	S	E	F	F	T	E	A	F	F	N	D	C	R	K	L	N	I	V	Y	P	D	K	V	L	V	A	S	K	H
Template Known Secondary structure				B	S	S	S																							T	T										B		S																								T	T					S					G	G	G
Template Predicted Secondary structure
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.						.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.
Query SS confidence																					.	.	.	.	.
Query Sequence		F	D	Q	L	H	A	Y	A	I	E	L	I	N	K	G	L	A	Y	V	.	.	.	.	.	D	E	L	T	P	E	Q	I	R	E	Y	R	G	T	L	T	Q	P	G	K	N	S	P	Y	R	D	R	S	V	E	E	N	L	A	L	F	E	K	M	R	A	G	G	F	E	E	G	K	A	C	L	R	A	K	I	D
Query Conservation																					.	.	.	.	.
Alig confidence																					.	.	.	.	.					.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	P	I	M	I	E	V	V	K	I	L	E	E	K	K	I	T	Y	F	S	N	G	N	V	Y	F	D	T	.	.	.	.	.	.	.	.	S	C	F	K	S	Y	G	E	M	A	G	I	K	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure															T	T						T	T						G	.	.	.	.	.	.	.	.	G	G		T	T	T	T	G	G	G					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.									.	.	.	.	.	160	.	.	.	.	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.					.	.	200	.	.	.	.	.	.	.	.	.	210	.											.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																					.	.	.	.															.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.															.	.	.	.	.	.	.	.	.	.
Query Sequence		M	A	S	P	F	I	V	M	R	D	P	V	L	Y	R	I	K	F	A	.	.	.	.	E	H	H	Q	T	G	N	K	W	C	I	Y	P	M	.	.	.	.	.	.	.	.	.	.	Y	D	F	T	H	C	I	S	D	A	L	E	G	I	T	H	S	L	C	T	L	E	F	Q	D	N	R	R	L	Y	D	W	V
Query Conservation																					.	.	.	.															.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																.	.	.	.															.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Template Conservation		.	.	.	.																																																													.	.	.	.	.	.
Template Sequence		.	.	.	.	K	R	N	K	T	D	F	V	L	W	F	T	N	S	K	F	K	D	Q	E	M	K	W	D	S	P	W	G	F	G	Y	P	S	W	H	L	E	C	A	A	M	N	L	E	Y	F	K	D	A	L	D	I	H	L	G	G	V	D	H	I	.	.	.	.	.	.	G	V	H	H	I	N	E	I	A	I
Template Known Secondary structure		.	.	.	.	S	S	S	T	T									S				T	T				B			T	T		S																		T	T									G	G	G	T	.	.	.	.	.	.	T	T
Template Predicted Secondary structure		.	.	.	.																																																													.	.	.	.	.	.
Template SS confidence
						184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.							.	.	.	.	.	.	250	.	.	.
		245	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		L	D	N	I	.	T	I	P	V	H	P	R	Q	Y	E	F	S	R	L	N	L	E	Y	T	V	M	S	K	R	K	L	N	L	L	V	T	D	K	H	V	E	G	W	D	D	P	R	M	P	T	I	S	G	L	R	R	R	G	Y	T	A	A	S	I	R	E	F	C	K	R	I	G	V	T	K	Q	D	N	T	I
Query Conservation						.
Alig confidence						.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Sequence		A	E	C	F	L	N	K	K	W	C	D	V	F	V	H	G	E	F	L	I	M	D	Y	N	K	M	S	F	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	K	D	L	E	D	Q	N	F	S	P	L	D	F	R	Y	L	C	L	.	T	S	H	Y	R	N	Q	L	K	F
Template Known Secondary structure							T	S				S										S	S	S	S	B					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T												.	T	S		T	T	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.																					.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.		.	.	.	.	.	.	.	310	.	.
		324	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	A	S	L	E	S	C	I	R	E	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	D	N	L	Q	A	S	K	I	A	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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