Job Description P00962 Confidence 99.39% Date Thu Jan 5 10:57:24 GMT 2012 Rank 31 Aligned Residues 283 % Identity 13% Template c3kflA_ PDB info PDB header:ligase Chain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: leishmania major methionyl-trna synthetase in complex with2 methionyladenylate and pyrophosphate Resolution 2.00 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.						.	.	.	60	.	.	.	.	.	.	.	.	.	70														.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	H	T	R	F	P	P	E	P	N	G	Y	L	H	I	G	H	A	K	S	I	C	L	N	F	G	I	A	Q	.	.	.	.	.	D	Y	K	G	Q	C	N	L	R	F	D	D	T	N	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	K	E	D	I	E	Y	V	E	S	I	K	N	D	V	E	W	L
Query Conservation																															.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	A	T	T	P	I	Y	Y	V	N	A	S	P	H	I	G	H	V	Y	S	T	L	I	V	D	V	L	G	R	Y	H	R	V	K	G	E	E	V	F	V	M	T	G	T	D	E	H	G	Q	K	V	A	E	A	A	A	K	Q	G	V	S	P	M	D	F	T	T	S	V	S	S	E	F	K	Q	C	F	Q	E	M
Template Known Secondary structure											S	S																								T													S										T	T																					T
Template Predicted Secondary structure
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure										.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	F	H	W	S	G	N	V	.	R	Y	S	S	D	Y	F	D	Q	L	H	A	Y	A	I	E	L	I	N	K	G	L	A	Y	V	D	E	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation										.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	Y	D	M	N	Y	F	I	R	T	T	N	P	T	H	E	K	L	V	Q	D	I	W	K	K	L	A	A	K	G	D	I	Y	L	G	K	Y	E	G	W	Y	S	V	S	D	E	S	F	L	T	A	Q	N	V	A	D	G	V	D	R	D	G	K	P	C	K	V	S	L	E	S	G	H	V	V	T	W	V	E	E
Template Known Secondary structure		T				S					T	T	S																		T													T	T	T	T					G	G	G							T	T	S							T	T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
												127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.					.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	P	E	Q	I	R	E	Y	R	G	T	L	T	Q	P	G	K	N	S	P	Y	R	D	R	S	V	E	E	N	L	A	L	F	E	K	M	R	A	G	G	F	E	E	G	K	A	C	L	R	A	K	I	D	.	.	.	.	M	A	S	P	F	I	V	M	R	D	P	V	L	Y
Query Conservation		.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.
Template Sequence		E	N	Y	M	F	R	L	S	A	F	R	E	R	L	L	K	Y	F	H	D	H	P	N	C	I	V	P	E	F	R	R	R	E	V	I	K	T	V	E	K	.	.	.	.	.	.	.	.	.	.	G	L	F	D	L	S	I	S	R	K	R	E	S	V	M	N	W	S	I	P	V	P	G	D	E	R	H	C	I	Y
Template Known Secondary structure								G	G	G	G												T	T	S			S														.	.	.	.	.	.	.	.	.	.											G	G	G	G	T	T		S				T	T
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.											.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
		193		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.				.	230	.	.	.	.	.	.		.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure			.																																				.	.	.									.
Query SS confidence			.																																				.	.	.									.
Query Sequence		R	.	I	K	F	A	E	H	H	Q	T	G	N	K	W	C	I	Y	P	M	Y	D	F	T	H	C	I	S	D	A	L	E	G	I	T	H	S	.	.	.	L	C	T	L	E	F	Q	D	.	N	R	R	L	Y	D	W	V	L	D	N	I	T	I	P	V	H	P	R	Q	Y	E	F	S	R	L	N	L	E	Y	T
Query Conservation			.																																				.	.	.									.
Alig confidence			.																																				.	.	.									.
Template Conservation
Template Sequence		V	W	L	D	A	L	F	N	Y	Y	T	G	A	L	T	R	V	A	T	D	G	T	E	T	L	D	E	D	H	H	A	L	N	R	W	P	A	D	V	H	V	V	G	K	D	I	L	K	F	H	A	I	Y	W	P	A	F	L	M	S	A	E	L	P	L	P	E	R	L	V	S	H	G	W	W	T	K	D	H	K
Template Known Secondary structure								T												T	T	S						S	S	S	T	T	T	T			S		S						G	G	G						T									T	T					S											T	T
Template Predicted Secondary structure
Template SS confidence
		442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	S	K	R	K	L	N	L	L	V	T	D	K	H	V	E	G	W	D	D	P	R	M	P	T	I	S	G	L	R	R	R	G	Y	T	A	A	S	I	R	E	F	C	K	R	I	G	V	T	K	Q	D	N	T	I	E	M	A	S	L	E	S	C	I	R	E	D	L
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Sequence		K	I	S	K	S	L	G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	F	D	P	V	E	K	A	K	E	.	F	G	I	D	A	L	K	Y	F	L	M	R	E	S	N	F	Q	D	D	G	D	Y	S	D	K	N	M	V	A	R	L	N	G	E	L
Template Known Secondary structure					T	T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.																S	S																	T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template SS confidence
		522	.	.	.	.	.	.	.																530	.	.	.	.	.	.	.	.	.		540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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