Job Description P00962 Confidence 98.01% Date Thu Jan 5 10:57:24 GMT 2012 Rank 49 Aligned Residues 220 % Identity 18% Template c3focB_ PDB info PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: tryptophanyl-trna synthetase from giardia lamblia Resolution 2.09 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.						.	70	.	.				.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.					.	.	.
Query SS confidence																																																							.	.	.	.	.					.	.	.
Query Sequence		I	D	E	D	L	A	S	G	K	H	T	T	V	H	T	R	F	P	P	E	P	N	G	Y	L	H	I	G	H	A	K	S	I	C	L	N	F	G	I	A	Q	D	Y	K	G	Q	C	N	L	R	F	D	D	.	.	.	.	.	T	N	P	V	.	.	.	K	E	D	I	E	Y	V	E	S	I	K	N	D	V	E
Query Conservation																																																							.	.	.	.	.					.	.	.
Alig confidence																						.																																	.	.	.	.	.					.	.	.
Template Conservation																						.
Template Sequence		F	L	S	Y	Y	E	K	G	H	P	I	Y	I	Y	T	G	R	G	P	S	.	S	G	A	L	H	L	G	H	L	L	P	F	I	F	T	K	Y	L	Q	D	A	F	K	C	Y	V	V	I	Q	I	T	D	D	E	K	F	L	R	N	R	S	L	S	Y	A	E	V	D	S	Y	T	R	E	N	I	K	D	I	I
Template Known Secondary structure								T	T													.	S	S			B																		T																	T	T
Template Predicted Secondary structure																						.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		88	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure									.													.	.
Query SS confidence									.													.	.
Query Sequence		W	L	G	F	H	W	S	.	G	N	V	R	Y	S	S	D	Y	F	D	Q	.	.	L	H	A	Y	A	I	E	L	I	N	K	G	L	A	Y	V	D	E	L	T	P	E	Q	I	R	E	Y	R	G	T	L	T	Q	P	G	K	N	S	P	Y	R	D	R	S	V	E	E	N	L	A	L	F	E	K	M	R	A	G
Query Conservation									.													.	.
Alig confidence									.													.	.												.	.	.	.	.	.	.													.	.
Template Conservation																																			.	.	.	.	.	.	.													.	.
Template Sequence		A	C	G	F	D	P	D	K	T	F	I	F	I	N	S	Q	Y	L	S	L	K	N	R	Y	R	F	S	C	L	V	D	R	M	.	.	.	.	.	.	.	L	P	I	S	Q	L	R	A	S	F	G	F	.	.	S	N	D	A	N	V	G	Y	A	A	F	P	P	K	Q	M	L	P	V	Y	S	T	Y	F	D	G
Template Known Secondary structure		T	T	T			G	G	G										T	T	S	T	T											T	.	.	.	.	.	.	.													.	.		S	S							T							G	G	G	S	G	G	G	G	T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.													.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.								.	.	.	.	.	.	.	.	180	.	.	.			.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	E	E	G	K	A	C	L	R	A	K	I	D	M	A	S	P	F	I	V	M	R	D	P	V	L	Y	R	I	K	F	A	E	H	H	Q	T	G	N	K	W	C	I	Y	P	M	Y	D	F	T	H	C	I	S	D	A	L	E	G	I	T	H	S	L	C	T	L	E	F	Q	D	N	R	R	L	Y	D	W	V
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	P	F	T	R	.	.	.	.	.	.	.	.	.	V	P	L	P	V	G	A	V	L	S	P	V	H	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	E	L	F	P	D	S	K	R	Y	Q	K	A	M	C	L	I	A	S	G	I	E	Q	D	P	Y	F	R	L	A	R	D	L
Template Known Secondary structure		S	G	G	G		.	.	.	.	.	.	.	.	.	S	B													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						G	G	G	T	T	B											T	T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		210	.	.	.	.										.	.	.	.	.	220	.	.	.	.	.	.	.	.																			.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.			.	.	.	270	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		L	D	N	I	T	I	P	V	H	P	R	Q	Y	E	F	S	R	L	N	L	E	Y	.	.	T	V	M	S	K	R
Query Conservation																								.	.
Alig confidence																								.	.
Template Conservation
Template Sequence		A	P	R	M	G	H	P	K	N	A	Y	L	L	G	K	F	L	P	G	L	Q	G	S	G	T	K	M	S	A	S
Template Known Secondary structure		T	T	T	T	T	S														T	T		T	T					S	S
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions