Phyre 2 alignment of P00962 with c3fnrA

Job Description P00962
Confidence 99.63% Date Thu Jan 5 10:57:24 GMT 2012

Rank 27 Aligned Residues 294

% Identity 12% Template c3fnrA_

PDB info PDB header:transferase Chain: A: PDB Molecule:arginyl-trna synthetase; PDBTitle: crystal structure of putative arginyl t-rna synthetase from2 campylobacter jejuni;

Resolution 2.20 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	11	.	.	.	.	.	.	.	.	20	.	.									.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.						.	.	.	60	.	.	.	.	.	.	.	.	.	70	.			.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.										.																										.	.	.	.	.																.	.
Query SS confidence													.	.	.	.	.	.	.	.										.																										.	.	.	.	.																.	.
Query Sequence	F	I	R	Q	I	I	D	E	D	L	A	S	.	.	.	.	.	.	.	.	G	K	H	T	T	V	H	T	R	.	F	P	P	E	P	N	G	Y	L	H	I	G	H	A	K	S	I	C	L	N	F	G	I	A	Q	.	.	.	.	.	D	Y	K	G	Q	C	N	L	R	F	D	D	T	N	P	.	.	V	K	E
Query Conservation													.	.	.	.	.	.	.	.										.																										.	.	.	.	.																.	.
Alig confidence													.	.	.	.	.	.	.	.										.																										.	.	.	.	.																.	.
Template Conservation
Template Sequence	F	L	N	E	L	A	N	Q	A	L	T	N	P	N	D	F	T	K	G	E	K	K	Q	E	S	F	L	L	E	Y	V	S	A	N	P	T	G	P	L	H	I	G	H	A	R	G	A	V	F	G	D	T	L	T	R	L	A	R	H	L	G	Y	K	F	N	T	E	Y	Y	V	N	D	A	G	N	Q	I	Y	L	L
Template Known Secondary structure												S	G	G	G	T	T						S												S	S	S	S		B	G	G	G																	T	T
Template Predicted Secondary structure
Template SS confidence
	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160

	75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120										.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.
Query Sequence	D	I	E	Y	V	E	S	I	K	N	D	V	E	W	L	G	F	H	W	S	G	N	V	R	Y	S	S	D	Y	F	D	Q	L	H	A	Y	A	I	E	L	I	N	K	G	L	A	.	.	.	.	.	.	.	.	.	Y	V	D	E	L	T	P	E	Q	I	R	E	Y	R	G	T	L	T	Q	P	G	K	N	S	P
Query Conservation																																															.	.	.	.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	G	L	S	I	L	L	S	V	K	E	S	I	L	H	E	N	V	E	Y	P	E	Q	Y	Y	K	G	E	Y	I	V	D	L	A	K	E	A	F	E	K	F	G	K	E	F	F	S	E	E	N	I	P	S	L	A	D	W	A	K	D	K	M	L	V	L	I	K	Q	N	L	E	Q	A	K	I	K	I	D	S	Y	V
Template Known Secondary structure												T	S								S	S				S																G	G	G		S	G	G	G																							T	T				S
Template Predicted Secondary structure
Template SS confidence
	161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

	146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	R	D	R	S	V	E	E	N	L	A	L	F	E	K	M	R	A	G	G	F	E	E	G	K	A	C	L	R	A	K	I	D	M	A	S	P	F	I	V	M	R	D	P	V	L	Y	R	I	K	F	A	E	H	H	Q	T	G	N	K	W	C	I	Y	P	M	Y	D	F	T	H	C	I	S	D	A	L	E	G	I
Query Conservation
Alig confidence																																								.	.													.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.													.	.	.	.	.	.	.	.	.
Template Sequence	S	E	R	S	Y	Y	D	A	L	N	A	T	L	E	S	L	K	E	H	K	G	I	Y	E	Q	E	G	K	I	W	L	A	S	S	Q	K	G	D	E	.	.	K	D	R	V	I	I	R	E	D	G	R	G	.	.	.	.	.	.	.	.	.	T	Y	L	A	A	D	I	V	Y	H	K	D	K	M	S	R	G	Y
Template Known Secondary structure		G	G	G	G	S	T	T											T	T						T	T						G	G	G	G	T		S	.	.	S							T	T	S		B	.	.	.	.	.	.	.	.	.															T	S	S
Template Predicted Secondary structure																																								.	.													.	.	.	.	.	.	.	.	.
Template SS confidence
	241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.			280	.	.	.	.	.	.	.	.	.	290	.										.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.

	226	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.			.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure						.	.																									.	.
Query SS confidence						.	.																									.	.
Query Sequence	T	H	S	L	C	.	.	T	L	E	F	Q	D	N	R	R	L	Y	D	W	V	L	D	N	I	T	I	P	V	H	P	.	.	R	Q	Y	E	F	S	R	L	N	L	E	Y	T	V	M	S	K	R	K	L	N	L	L	V	T	D	K	H	V	E	G	W	D	D	P	R	M	P	T	I	S	G	L	R	R	R	G
Query Conservation						.	.																									.	.
Alig confidence						.	.																									.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Sequence	G	K	C	I	N	I	W	G	A	D	H	H	G	Y	I	P	R	M	K	A	A	M	E	F	L	G	F	D	S	N	N	L	E	I	I	L	A	Q	M	V	S	L	L	K	D	G	E	P	Y	K	M	A	G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	I	L	M	S	D	V	V	D	.	E
Template Known Secondary structure	S								G	G	G	G	G	G										T	T	T			G	G	G														T	T								S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		B							.
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template SS confidence
	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.																.	.	.	.	.	.	370	.	.		.

	302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	T	A	A	S	I	R	E	F	C	K	R	I	G	V	T	K	Q	D	N	T	I	E	M	A	S	L	E	S	C	I
Query Conservation
Alig confidence													.
Template Conservation													.
Template Sequence	I	G	S	D	A	L	R	Y	I	F	L	S	.	K	K	C	D	T	H	L	E	F	D	I	S	D	L	Q	K	E	D
Template Known Secondary structure										T	T	S	.	S		T	T	S						G	G	G	G	G			S
Template Predicted Secondary structure													.
Template SS confidence
	377	.	.	380	.	.	.	.	.	.	.	.		.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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