Job Description P00962 Confidence 100.00% Date Thu Jan 5 10:57:24 GMT 2012 Rank 6 Aligned Residues 289 % Identity 22% Template c3al0C_ PDB info PDB header:ligase/rna Chain: C: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit c, glutamyl- PDBTitle: crystal structure of the glutamine transamidosome from thermotoga2 maritima in the glutamylation state. Resolution 3.37 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.																	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	Q	I	I	D	E	D	L	A	S	G	K	H	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	H	T	R	F	P	P	E	P	N	G	Y	L	H	I	G	H	A	K	S	I	C	L	N	F	G	I	A	Q	D	Y	K	G	Q	C	N	L	R	F	D	D	T	N	P	V	K	E	D	I
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	D	L	I	K	K	N	F	P	E	E	K	D	G	H	I	K	V	P	G	I	P	K	K	I	R	R	C	F	E	L	V	R	V	R	F	A	P	S	P	T	G	H	L	H	V	G	G	A	R	T	A	L	F	N	W	M	F	A	R	K	E	G	G	K	F	I	L	R	I	E	D	T	D	T	E	R	S	S	R
Template Known Secondary structure							T	T		S				T	T																										S	S	S			B																		T							B					S	S	S
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.									.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.
Query Sequence		E	Y	V	E	S	I	K	N	D	V	E	W	L	G	F	H	W	S	G	N	V	.	.	.	.	.	.	.	.	R	Y	S	S	D	Y	F	D	Q	L	H	A	Y	A	I	E	L	I	N	K	G	L	A	Y	V	D	E	L	T	P	E	Q	I	R	E	Y	R	G	T	L	T	Q	P	G	K	N	S	P	Y	R	D
Query Conservation																							.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.																																								.	.	.	.
Template Conservation																																																																						.	.	.	.
Template Sequence		E	Y	E	Q	Q	I	L	E	S	L	R	W	C	G	L	D	W	D	E	G	P	D	I	G	G	D	F	G	P	Y	R	Q	S	E	R	L	E	I	Y	R	E	Y	A	E	K	L	V	E	D	K	R	A	Y	Y	V	V	Y	D	K	E	D	P	S	K	E	L	F	T	.	.	.	.	T	Y	E	Y	P	H	E	Y
Template Known Secondary structure														T	T				S	B	B	T	T	T	B		T	T				B	S	T	T															T	T	T								T	T									.	.	.	.		S	S
Template Predicted Secondary structure																																																																						.	.	.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.					.	.	.	.	250	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	V	E	E	N	L	A	L	F	E	K	M	R	A	G	G	F	E	E	G	K	A	C	L	R	A	K	I	D	M	A	S	P	F	I	V	M	R	D	P	V	L	Y	R	I	K	F	A	E	H	H	Q	T	G	N	K	W	C	I	Y	P	M	Y	D	F	T	H	C	I	S	D	A	L	E	G	I	T	H	S
Query Conservation
Alig confidence																										.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	E	K	G	H	P	V	T	I	K	F	K	V	L	P	G	K	T	S	F	E	D	L	L	.	.	.	K	G	Y	M	E	F	D	N	S	T	L	E	D	F	I	I	M	K	.	.	.	.	.	.	.	.	.	.	.	.	S	N	G	F	P	T	Y	N	F	A	V	V	V	D	D	H	L	M	R	I	S	H	V
Template Known Secondary structure				T	T											S	S							T	T	.	.	.	T		S					S	S	S	S								.	.	.	.	.	.	.	.	.	.	.	.	T	T	S															T	T		S	B
Template Predicted Secondary structure																										.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.				.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.													.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	C	T	L	E	F	Q	D	N	R	R	L	Y	D	W	V	L	D	N	I	T	I	P	V	H	P	R	Q	Y	E	F	S	R	L	N	L	E	Y	T	V	M	S	K	R	K	L	N	L	L	V	T	D	K	H	V	E	G	W	D	D	P	R	M	P	T	I	S	G	L	R	R	R	G	Y	T	A	A	S	I	R
Query Conservation
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	R	G	E	D	H	L	S	N	T	P	K	Q	L	M	I	Y	E	A	F	G	W	E	A	P	V	F	M	H	I	P	L	I	L	G	S	D	R	T	P	L	S	K	R	H	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	V	E	H	F	R	R	E	G	I	L	S	R	A	L	M
Template Known Secondary structure					G	G	G	G	G	G									T	T	T	T					B								B		T	T	S	S	B			T	T	T		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	B							T	T
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.																	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
		309	310	.	.	.	.	.	.	.																							.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	F	C	K	R	I	G	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	Q	D	N	T	I	E	M	A	S	L	E	S	C	I	R	E	D	L
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	Y	L	A	L	L	G	W	R	V	E	G	D	E	I	F	T	I	E	E	K	L	Q	S	F	D	P	K	D	I	S	N	K	G	V	I	F	D	Y	Q	K	L	E	W	V	N	G	K	H	M
Template Known Secondary structure					T	T	T	T	B				S		S				T	T	T	T	G	G	G			T	T	S	B		S	S			B
Template Predicted Secondary structure
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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