Job Description P00962 Confidence 100.00% Date Thu Jan 5 10:57:24 GMT 2012 Rank 3 Aligned Residues 451 % Identity 33% Template c3aiiA_ PDB info PDB header:ligase Chain: A: PDB Molecule:glutamyl-trna synthetase; PDBTitle: archaeal non-discriminating glutamyl-trna synthetase from2 methanothermobacter thermautotrophicus Resolution 1.65 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	A	S	G	K	H	T	T	V	H	T	R	F	P	P	E	P	N	G	Y	L	H	I	G	H	A	K	S	I	C	L	N	F	G	I	A	Q	D	Y	K	G	Q	C	N	L	R	F	D	D	T	N	P	V	K	E	D	I	E	Y	V	E	S	I	K	N	D	V	E	W	L	G	F	H	W	S	G	N	V	R
Query Conservation
Alig confidence								.																																																																						.
Template Conservation								.																																																																						.
Template Sequence		E	L	A	G	V	K	.	G	E	V	V	L	R	F	A	P	N	P	S	G	P	L	H	I	G	H	A	R	A	A	I	L	N	H	E	Y	A	R	K	Y	D	G	R	L	I	L	R	I	E	D	T	D	P	R	R	V	D	P	E	A	Y	D	M	I	P	A	D	L	E	W	L	G	V	E	W	D	.	E	T	V
Template Known Secondary structure				S	S			.	S										S	S	S	S		B																	T	T												G	G	G			T	T													T				S	.
Template Predicted Secondary structure								.																																																																						.
Template SS confidence
		89	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.		.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	S	S	D	Y	F	D	Q	L	H	A	Y	A	I	E	L	I	N	K	G	L	A	Y	V	D	E	L	T	P	E	Q	I	R	E	Y	R	G	T	L	T	Q	P	G	K	N	S	P	Y	R	D	R	S	V	E	E	N	L	A	L	F	E	K	M	R	A	G	G	F	E	E	G	K	A	C	L	R	A	K	I	D
Query Conservation
Alig confidence																																								.	.	.	.																										.	.
Template Conservation																																								.	.	.	.																										.	.
Template Sequence		I	Q	S	D	R	M	E	T	Y	Y	E	Y	T	E	K	L	I	E	R	G	G	A	Y	V	C	T	C	R	P	E	E	F	R	E	L	K	N	R	.	.	.	.	G	E	A	C	H	C	R	S	L	G	F	R	E	N	L	Q	R	W	R	E	M	F	E	M	K	.	.	E	G	S	A	V	V	R	V	K	T	D
Template Known Secondary structure			G	G	G	G														T	T	S						S											T	.	.	.	.	T				G	G	G	G													G	G	G	S		.	.	T	T	S
Template Predicted Secondary structure																																								.	.	.	.																										.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.					.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	S	P	F	I	V	M	R	D	P	V	L	Y	R	I	K	F	A	E	H	H	Q	T	G	N	K	W	C	I	Y	P	M	Y	D	F	T	H	C	I	S	D	A	L	E	G	I	T	H	S	L	C	T	L	E	F	Q	D	N	R	R	L	Y	D	W	V	L	D	N	I	T	I	P	V	H	P	R	Q	Y	E
Query Conservation
Alig confidence																																																							.	.	.	.	.																.
Template Conservation																																																							.	.	.	.	.																.
Template Sequence		L	N	H	P	N	P	A	I	R	D	W	V	S	M	R	I	V	E	A	E	H	P	R	T	G	T	R	Y	R	V	Y	P	M	M	N	F	S	V	A	V	D	D	H	L	L	G	V	T	H	V	L	R	A	.	.	.	.	.	N	R	E	K	Q	E	Y	L	Y	R	H	L	G	W	E	.	P	P	E	F	I	H
Template Known Secondary structure		T	T		S	S	G	G	G	T	T									S		B	T	T	T	B	T	S																		T	T								.	.	.	.	.													T			.
Template Predicted Secondary structure																																																							.	.	.	.	.																.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.						.	.	.	.	.	.	300	.	.	.	.	.	.	.	.		.	310	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	R	L	N	L	E	Y	T	V	M	S	K	R	K	L	N	L	L	V	T	D	K	H	V	E	G	W	D	D	P	R	M	P	T	I	S	G	L	R	R	R	G	Y	T	A	A	S	I	R	E	F	C	K	R	I	G	V	T	K	Q	D	N	T	I	E	M	A	S	L	E	S	C	I	R	E	D	L	N	E
Query Conservation
Alig confidence							.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.
Template Sequence		Y	G	R	L	K	.	.	.	.	.	.	.	T	S	G	A	R	E	G	I	L	R	G	E	Y	S	G	W	D	D	P	R	L	G	T	L	R	A	I	A	R	R	G	I	R	P	E	A	I	R	K	L	M	V	E	I	G	V	K	I	A	D	S	T	M	S	W	K	K	I	Y	G	L	N	R	S	I	L	E	E
Template Known Secondary structure					B		.	.	.	.	.	.	.											S	S			S	T	T		T	T	S		B							T	T														T	T		S	S		B																T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.
Template SS confidence
		320	.	.	.	.								.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	P	R	A	M	A	V	I	D	P	V	K	L	V	I	E	N	Y	Q	G	E	G	E	M	V	T	M	P	N	H	P	N	K	P	E	M	G	S	R	Q	V	P	F	S	G	E	I	W	I	D	R	A	D	F	R	E	E	A	N	K	Q	Y	K	R	L	V	L	G	K	E	V	R	L	R	N	A	Y	V	I
Query Conservation
Alig confidence																						.																																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.																																					.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	A	R	R	Y	F	F	A	A	D	P	V	K	L	E	V	V	G	L	P	.	G	P	V	R	V	E	R	P	L	H	P	D	H	P	E	I	G	N	R	V	L	E	L	R	G	E	V	Y	L	P	G	D	D	L	G	E	.	.	.	.	.	.	.	.	.	.	.	.	G	P	L	R	L	I	D	A	V	N	V
Template Known Secondary structure		T									S								T			.	S								S		T	T		G	G	G								S	S							T	T			S	.	.	.	.	.	.	.	.	.	.	.	.						T	T	T
Template Predicted Secondary structure																						.																																					.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.													.	.	.	.	460	.	.	.	.	.	.
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	E	R	V	E	K	D	A	E	G	N	I	T	T	I	F	C	T	Y	D	A	D	T	L	S	K	D	P	A	D	G	R	K	V	K	G	V	I	H	W	V	S	A	A	H	A	L	P	V	E	I	R	L	Y	D	R	L	F	S	V	P	N	P	G	A	A	D	D	F	L	S	V	I	N	P	E	S	L	V
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	Y	S	G	G	E	L	R	Y	H	S	E	G	I	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	R	E	L	G	A	S	M	I	H	W	V	P	A	E	S	A	L	E	A	E	V	I	M	P	D	A	S	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					T	T								S			.	.	.	.	.	.	.	.	.	.	.	.	.	.						T									G	G	G									T	T	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		467	.	.	470	.	.	.	.	.	.	.	.	.	480	.															.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
		499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	Q	G	F	A	E	P	S	L	K	D	A	V	A	G	K	A	F	Q	F	E	R	E	G	Y	F	C	L	D	S	R	H	S	T	A	E	K	P	V	F	N	R	T
Query Conservation
Alig confidence		.																															.	.	.
Template Conservation		.																															.	.	.
Template Sequence		.	V	R	G	V	I	E	A	D	A	S	E	L	E	V	D	D	V	V	Q	L	E	R	F	G	F	A	R	L	D	S	.	.	.	A	G	P	G	M	V	F	Y	Y	A
Template Known Secondary structure		.							G	G	G	G	G			T	T						T	T	T								.	.	.		S	S	S
Template Predicted Secondary structure		.																															.	.	.
Template SS confidence
			512	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.				.	.	.	.	.	.	.	.	550	.