Job Description P00962 Confidence 99.77% Date Thu Jan 5 10:57:24 GMT 2012 Rank 23 Aligned Residues 282 % Identity 15% Template c2x1lC_ PDB info PDB header:ligase Chain: C: PDB Molecule:methionyl-trna synthetase; PDBTitle: crystal structure of mycobacterium smegmatis methionyl-trna2 synthetase in complex with methionine and adenosine Resolution 2.30 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.			.	.	.	60	.	.	.	.	.	.	.	.	.	70																	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	H	T	R	F	P	P	E	P	N	G	Y	L	H	I	G	H	A	K	S	I	C	L	N	F	G	I	A	Q	.	.	D	Y	K	G	Q	C	N	L	R	F	D	D	T	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	K	E	D	I	E	Y	V	E	S	I	K	N	D	V	E	W	L
Query Conservation																															.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	I	T	T	A	I	A	Y	P	N	G	V	P	H	I	G	H	A	Y	E	Y	I	A	T	D	A	I	A	R	F	K	R	L	D	G	Y	D	V	R	Y	L	T	G	T	D	V	H	G	Q	K	M	A	E	T	A	A	K	E	G	I	P	A	A	E	L	A	R	R	N	S	D	V	F	Q	R	L	Q	E	K	L
Template Known Secondary structure								B			S	S																							T	T													S											T																					T
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.			.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.									.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.																					.	.	.	.	.	.	.	.
Query SS confidence															.	.																					.	.	.	.	.	.	.	.
Query Sequence		G	F	H	W	S	G	N	V	R	Y	S	S	D	.	.	Y	F	D	Q	L	H	A	Y	A	I	E	L	I	N	K	G	L	A	Y	V	.	.	.	.	.	.	.	.	D	E	L	T	P	E	Q	I	R	E	Y	R	G	T	L	T	Q	P	G	K	N	S	P	Y	R	D	R	S	V	E	E	N	L	A	L	F	E
Query Conservation															.	.																					.	.	.	.	.	.	.	.
Alig confidence							.								.	.																					.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation							.																																																				.	.	.	.
Template Sequence		N	I	S	F	D	.	R	F	I	R	T	S	D	A	D	H	Y	E	A	S	K	A	I	W	K	R	M	A	D	A	G	D	I	Y	L	D	A	Y	T	E	E	Q	T	Y	F	F	R	L	S	A	Y	T	D	R	L	L	A	.	.	.	.	L	Y	E	E	H	P	E	F	I	G	P	D	A	R	R	N	E	I	V
Template Known Secondary structure		T				S	.					T	T	S																	T	T																	G	G	G	S							.	.	.	.						G	G	G			S
Template Predicted Secondary structure							.																																																				.	.	.	.
Template SS confidence
		86	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.					.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.
Query SS confidence																																																										.	.
Query Sequence		K	M	R	A	G	G	F	E	E	G	K	A	C	L	R	A	K	I	D	M	A	S	P	F	I	V	M	R	D	P	V	L	Y	R	I	K	F	A	E	H	H	Q	T	G	N	K	W	C	I	Y	P	M	Y	D	F	T	.	.	H	C	I	S	D	A	L	E	G	I	T	H	S	L	C	T	L	E	F	Q	D	N
Query Conservation																																																										.	.
Alig confidence																																																										.	.														.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.
Template Sequence		S	F	V	S	G	G	L	K	D	L	S	I	S	R	T	T	F	D	W	G	V	P	V	P	D	H	P	D	H	V	M	Y	V	W	V	D	A	L	T	N	Y	L	T	G	V	G	F	P	D	T	E	S	E	S	F	R	R	Y	W	P	A	D	L	H	M	I	G	K	D	I	I	.	.	.	.	.	.	R	F	H
Template Known Secondary structure					T	T										S	S				S				T	T														T					T	T	T	T	T		T	T	S								S		S						G	G	G		.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.							.	.	270
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	L	Y	D	W	V	L	D	N	I	T	I	P	V	H	P	R	Q	Y	E	F	S	R	L	N	L	E	Y	T	V	M	S	K	R	K	L	N	L	L	V	T	D	K	H	V	E	G	W	D	D	P	R	M	P	T	I	S	G	L	R	R	R	G	Y	T	A	A	S	I	R	E	F	C	K	R	I	G	V	T
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Sequence		T	V	Y	W	P	A	F	L	M	S	A	G	L	P	L	P	K	R	I	F	A	H	G	W	L	L	N	R	G	E	K	M	S	K	S	I	G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	D	P	V	N	L	V	D	T	.	F	G	L	D	Q	V	R	Y	F	L	L	R	E	V	P	F
Template Known Secondary structure			T										T					S												S		S			T	T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S									.														S		T
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.																.	310	.	.	.	.	.	.	.	.		.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	D	N	T	I	E	M	A	S	L	E	S	C	I	R	E	D	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Q	D	G	S	Y	N	E	D	A	I	I	G	R	V	N	A	D	L
Template Known Secondary structure		T	S
Template Predicted Secondary structure
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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