Job Description P00962 Confidence 100.00% Date Thu Jan 5 10:57:24 GMT 2012 Rank 2 Aligned Residues 536 % Identity 49% Template c2hz7A_ PDB info PDB header:ligase Chain: A: PDB Molecule:glutaminyl-trna synthetase; PDBTitle: crystal structure of the glutaminyl-trna synthetase from2 deinococcus radiodurans Resolution 2.30 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	A	R	P	T	N	F	I	R	Q	I	I	D	E	D	L	A	S	G	K	H	T	T	V	H	T	R	F	P	P	E	P	N	G	Y	L	H	I	G	H	A	K	S	I	C	L	N	F	G	I	A	Q	D	Y	K	G	Q	C	N	L	R	F	D	D	T	N	P	V	K	E	D	I	E	Y	V	E	S	I	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	P	L	V	A	P	N	F	I	T	E	I	I	E	R	D	L	E	A	G	K	Y	P	R	V	V	T	R	F	P	P	D	P	S	G	Y	A	H	L	G	H	V	F	A	S	L	L	D	F	N	T	A	R	Q	Y	G	G	Q	F	N	L	R	M	D	D	T	N	P	E	L	A	R	Q	E	Y	V	D	S	I	A
Template Known Secondary structure				S	S															T	T	S		S	S									S	S	S			B																	T	T												T	T	T
Template Predicted Secondary structure
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	V	E	W	L	G	F	H	W	S	G	N	V	R	Y	S	S	D	Y	F	D	Q	L	H	A	Y	A	I	E	L	I	N	K	G	L	A	Y	V	D	E	L	T	P	E	Q	I	R	E	Y	R	G	T	L	T	Q	P	G	K	N	S	P	Y	R	D	R	S	V	E	E	N	L	A	L	F	E	K	M	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	D	L	K	W	L	G	L	D	W	G	E	H	F	Y	Y	A	S	D	Y	F	D	R	Y	Y	A	Y	A	E	Q	L	I	R	Q	G	D	A	Y	V	E	S	V	S	P	E	E	L	S	R	L	R	G	N	A	T	T	P	G	T	P	S	P	Y	R	D	R	S	V	E	E	N	L	D	L	L	R	R	M	K	A
Template Known Secondary structure								T				T	T					G	G	G	G														T	T	S						S											B	T	T	B						T	T	T	T															T
Template Predicted Secondary structure
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	F	E	E	G	K	A	C	L	R	A	K	I	D	M	A	S	P	F	I	V	M	R	D	P	V	L	Y	R	I	K	F	A	E	H	H	Q	T	G	N	K	W	C	I	Y	P	M	Y	D	F	T	H	C	I	S	D	A	L	E	G	I	T	H	S	L	C	T	L	E	F	Q	D	N	R	R	L	Y	D	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	F	A	D	G	E	H	V	L	R	A	K	I	D	L	T	A	P	N	M	K	L	R	D	P	V	L	Y	R	I	V	N	K	P	H	F	R	T	S	D	E	W	H	I	Y	P	A	Y	D	F	E	H	P	L	Q	D	A	I	E	G	V	T	H	S	M	C	S	L	E	F	V	D	N	R	A	I	Y	D	W
Template Known Secondary structure		T		S		T	T	S									T	T		S	S	G	G	G	S	S											B	T	T	T	B	T	S		S																	T		S						G	G	G	T	T	T
Template Predicted Secondary structure
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	D	N	I	T	I	P	V	H	P	R	Q	Y	E	F	S	R	L	N	L	E	Y	T	V	M	S	K	R	K	L	N	L	L	V	T	D	K	H	V	E	G	W	D	D	P	R	M	P	T	I	S	G	L	R	R	R	G	Y	T	A	A	S	I	R	E	F	C	K	R	I	G	V	T	K	Q	D	N	T	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	M	E	K	L	N	F	D	P	R	P	H	Q	Y	E	F	G	R	R	G	L	E	Y	T	I	T	S	K	R	K	L	R	E	L	V	Q	A	G	R	V	S	G	W	D	D	P	R	M	P	T	L	R	A	Q	R	R	L	G	V	T	P	E	A	V	R	A	F	A	A	Q	I	G	V	S	R	T	N	R	T	V
Template Known Secondary structure						T	T		S	S													T	T														T	T	S	S	S	S	T	T		T	T	S	S	B								T													S				S	S
Template Predicted Secondary structure
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.																				.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	M	A	S	L	E	S	C	I	R	E	D	L	N	E	N	A	P	R	A	M	A	V	I	D	P	V	K	L	V	I	E	N	Y	Q	G	E	G	E	M	V	T	M	P	N	H	P	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	E	M	G	S	R	Q	V	P	F	S	G
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.
Template Sequence		D	I	A	V	Y	E	N	A	V	R	D	D	L	N	H	R	A	P	R	V	M	A	V	L	D	P	V	K	V	T	L	T	N	L	D	G	E	.	K	T	L	S	L	P	Y	W	P	H	D	V	V	R	D	S	P	D	G	L	V	G	M	P	G	G	G	R	V	A	P	E	E	A	V	R	D	V	P	L	T	R
Template Known Secondary structure																T	T								S	S							T	T			S		.							S	S							T		T	T	S					S	S	S					G	G	G									S
Template Predicted Secondary structure																																							.
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400		.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	W	I	D	R	A	D	F	R	E	E	A	N	K	Q	Y	K	R	L	V	L	G	K	E	V	R	L	R	N	A	Y	V	I	K	A	E	R	V	E	K	D	A	E	G	N	I	T	T	I	F	C	T	Y	D	A	D	T	L	S	K	D	P	A	D	G	R	K	V	K	G	V	I	H	W	V	S	A	A	H
Query Conservation
Alig confidence																																																									.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.
Template Sequence		E	L	Y	I	E	R	D	D	F	S	P	A	P	P	K	G	F	K	R	L	T	P	G	G	T	V	R	L	R	G	A	G	I	I	R	A	D	D	F	G	T	D	E	A	G	Q	V	T	H	I	R	A	T	L	L	.	.	.	.	.	.	.	.	G	E	D	A	K	A	A	G	V	I	H	W	V	S	A	E	R
Template Known Secondary structure							G	G	G	B		S	S			T	T			S	B		T	T						T	T	T												T	T	S											.	.	.	.	.	.	.	.		T	T				S								T	T	T
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.
Template SS confidence
		443	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.									.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.
		465	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	P	V	E	I	R	L	Y	D	R	L	F	S	V	P	N	P	G	A	A	D	D	F	L	S	V	I	N	P	E	S	L	V	I	K	Q	G	F	A	E	P	S	L	K	D	A	V	A	G	K	A	F	Q	F	E	R	E	G	Y	F	C	L	D	S	R	H	S	T	A	E	K	P	V	F	N	R	T	V	G
Query Conservation
Alig confidence																																																																			.
Template Conservation																																																																			.
Template Sequence		A	L	P	A	E	F	R	L	Y	D	R	L	F	R	V	P	H	P	E	G	E	N	G	F	M	R	Y	L	T	P	D	S	L	R	V	L	R	G	Y	V	E	P	S	V	A	G	D	P	A	D	T	R	Y	Q	F	E	R	Q	G	Y	F	W	R	D	P	.	V	E	L	E	R	V	L	V	F	G	R	I	I	T
Template Known Secondary structure													S	B	S	S	S		T	T					G	G	G	G	B		T	T	S										G	G	G	G	G	S		T	T						T	T	T								.
Template Predicted Secondary structure																																																																			.
Template SS confidence
		515	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.		580	.	.	.	.	.	.	.	.	.	590	.	.	.
		545	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	D	T	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	K	D	T	W
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		628	.	630	.	.