Job Description P00962 Confidence 99.79% Date Thu Jan 5 10:57:24 GMT 2012 Rank 22 Aligned Residues 280 % Identity 16% Template c2ct8A_ PDB info PDB header:ligase/rna Chain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: crystal structure of aquifex aeolicus methionyl-trna2 synthetase complexed with trna(met) and methionyl-adenylate3 anologue Resolution 2.70 Å

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		23	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.			.	.	.	60	.	.	.	.	.	.	.	.	.	70	.																	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure													.																								.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.																								.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	K	H	T	T	V	H	T	R	F	P	.	P	E	P	N	G	Y	L	H	I	G	H	A	K	S	I	C	L	N	F	G	I	A	Q	.	.	D	Y	K	G	Q	C	N	L	R	F	D	D	T	N	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	E	D	I	E	Y	V	E	S	I	K
Query Conservation													.																								.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.																								.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	L	M	K	K	F	Y	V	T	T	P	I	Y	Y	V	N	D	V	P	H	L	G	H	A	Y	T	T	I	A	A	D	T	I	A	R	Y	Y	R	L	R	D	Y	D	V	F	F	L	T	G	T	D	E	H	G	L	K	I	Q	K	K	A	E	E	L	G	I	S	P	K	E	L	V	D	R	N	A	E	R	F	K
Template Known Secondary structure			S	S												S	S	S																							T	T													S	S									T	T	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.			.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.						.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																					.	.																										.	.	.	.	.
Query SS confidence																					.	.																										.	.	.	.	.
Query Sequence		N	D	V	E	W	L	G	F	H	W	S	G	N	V	R	Y	S	S	D	.	.	Y	F	D	Q	L	H	A	Y	A	I	E	L	I	N	K	G	L	A	Y	V	D	E	L	T	P	.	.	.	.	.	E	Q	I	R	E	Y	R	G	T	L	T	Q	P	G	K	N	S	P	Y	R	D	R	S	V	E	E	N	L	A
Query Conservation																					.	.																										.	.	.	.	.
Alig confidence													.								.	.																										.	.	.	.	.
Template Conservation													.
Template Sequence		K	L	W	E	F	L	K	I	E	Y	T	.	K	F	I	R	T	T	D	P	Y	H	V	K	F	V	Q	K	V	F	E	E	C	Y	K	R	G	D	I	Y	L	G	E	Y	E	K	E	P	S	Y	F	F	R	L	S	K	Y	Q	D	K	L	L	E	L	Y	E	K	N	P	E	F	I	Q	P	D	Y	R	R	N	E
Template Known Secondary structure							T	T				S	.					T	T	S																	T	T	S																G	G	G	S											S	G	G	G	B		S
Template Predicted Secondary structure													.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.									.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.
Query Sequence		L	F	E	K	M	R	A	G	G	F	E	E	G	K	A	C	L	R	A	K	I	D	M	A	S	P	F	I	V	M	R	D	P	V	L	Y	R	I	K	F	A	E	H	H	Q	T	G	N	K	W	C	I	Y	P	M	Y	D	F	T	H	C	.	.	.	.	.	.	.	.	I	S	D	A	L	E	G	I	T	H	S
Query Conservation																																																															.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	I	S	F	V	K	Q	G	L	K	D	L	S	V	T	R	P	R	S	R	V	K	W	G	I	P	V	P	F	D	P	E	H	T	I	Y	V	.	.	.	.	.	.	.	.	.	.	.	W	F	D	A	L	F	N	Y	I	S	A	L	E	D	K	V	E	I	Y	W	P	A	D	L	H	L	V	G	K	D	I	L
Template Known Secondary structure						T	T	T											T	T	T			S	S		B		T	T		T	T						.	.	.	.	.	.	.	.	.	.	.						T					T	T	T	T							S		S						G	G	G
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.												230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	C	T	L	E	F	Q	D	N	R	R	L	Y	D	W	V	L	D	N	I	T	I	P	V	H	P	R	Q	Y	E	F	S	R	L	N	L	E	Y	T	V	M	S	K	R	K	L	N	L	L	V	T	D	K	H	V	E	G	W	D	D	P	R	M	P	T	I	S	G	L	R	R	R	G	Y	T	A	A	S	I	R
Query Conservation
Alig confidence		.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation		.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Sequence		.	.	.	.	.	.	R	F	H	T	V	Y	W	P	A	F	L	M	S	L	G	Y	E	L	P	K	K	V	F	A	H	G	W	W	T	V	E	G	K	K	M	S	K	T	L	G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	D	P	Y	E	V	V	Q	E	.	Y	G	L	D	E	V	R
Template Known Secondary structure		.	.	.	.	.	.					T										T					S										S	S	S	S				T	T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Predicted Secondary structure		.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template SS confidence
								262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.																.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	F	C	K	R	I	G	V	T	K	Q	D	N	T	I	E	M	A	S	L	E	S	C	I	R	E	D	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	F	L	L	R	E	V	P	F	G	Q	D	G	D	F	S	K	K	A	I	L	N	R	I	N	G	E	L
Template Known Secondary structure							S	S		T	T	S																T	T
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions