Job Description P00962 Confidence 96.43% Date Thu Jan 5 10:57:24 GMT 2012 Rank 73 Aligned Residues 178 % Identity 13% Template c1x8xA_ PDB info PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: tyrosyl t-rna synthetase from e.coli complexed with tyrosine Resolution 2.00 Å

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		35	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.						.	70	.	.															.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure							.																														.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.																														.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	P	N	G	Y	.	L	H	I	G	H	A	K	S	I	C	L	N	F	G	I	A	Q	D	Y	K	G	Q	C	N	L	R	F	D	D	.	.	.	.	.	T	N	P	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	E	D	I	E	Y	V	E	S	I	K	N	D	V	E	W	L	G	F	H	W	S
Query Conservation							.																														.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.									.																					.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.
Template Sequence		D	P	T	A	D	S	L	H	L	G	H	L	V	P	.	L	L	C	L	K	R	F	Q	Q	A	G	H	K	P	V	A	L	V	G	G	A	T	G	L	I	G	D	P	S	F	K	A	A	E	R	K	L	N	T	E	E	T	V	Q	E	W	V	D	K	I	R	K	Q	V	A	P	F	L	D	F	D	C	G	E	N
Template Known Secondary structure				S	S	S	S		B							.										T	T									T	T	G	G	G	T				T	T		S	S																						G	G	G	S		S	S	S	G	G	G
Template Predicted Secondary structure																.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	V	R	Y	S	S	D	Y	F	D	Q	L	H	A	Y	A	I	E	L	I	N	K	G	L	A	Y	V	D	E	L	T	P	E	Q	I	R	E	Y	R	G	T	L	T	Q	P	G	K	N	S	P	Y	R	D	R	S	V	E	E	N	L	A	L	F	E	K	M	R	A	G	G	F	E	E	G	K	A	C	L	R
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	A	I	A	A	N	N	Y	D	W	F	G	N	M	N	V	L	T	F	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	G	K	H	F	S	V	N	Q	M	I	N	K	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K
Template Known Secondary structure								T					T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	G	G	G								T				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140																													.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.														.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		A	K	I	D	M	A	S	P	F	I	V	M	R	D	P	V	L	Y	R	I	K	F	A	E	H	H	Q	T	G	N	K	W	C	I	Y	P	M	Y	D	F	T	H	C	I	.	S	D	A	L	E	G	I	T	H	S	L	C	T	L	E	F	Q	D	N	R	R	L	Y	D	W	V	L	D	N	I	T	I	P	V	H
Query Conservation																																														.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.																																		.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.
Template Sequence		Q	R	L	N	R	E	D	Q	G	I	S	F	T	E	F	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	N	L	L	Q	G	Y	D	F	A	C	L	N	K	Q	Y	G	V	V	L	Q	I	G	G	S	D	Q	W	G	N	I	T	S	G	I	D	L	T	R	R	L	H	Q	N	.	Q
Template Known Secondary structure							T	T									T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									G	G	G																		.
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.																			.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.
		254	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		P	R	Q	Y	E	F	S	R	L	.	N	L	E	Y	T	V	M	S	K	R	K
Query Conservation											.
Alig confidence											.
Template Conservation
Template Sequence		V	F	G	L	T	V	P	L	I	T	K	A	D	G	T	K	F	G	K	T	E
Template Known Secondary structure											B		T	T	S		B	T	T			T
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions