Job Description P00962 Confidence 99.92% Date Thu Jan 5 10:57:24 GMT 2012 Rank 18 Aligned Residues 260 % Identity 17% Template c1u0bB_ PDB info PDB header:ligase/rna Chain: B: PDB Molecule:cysteinyl trna; PDBTitle: crystal structure of cysteinyl-trna synthetase binary2 complex with trnacys Resolution 2.30 Å

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		25	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.						.	.	60	.	.	.	.	.	.	.	.	.	70														.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure											.	.																									.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.																									.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	T	T	V	H	T	R	F	P	.	.	P	E	P	N	G	Y	L	H	I	G	H	A	K	S	I	C	L	N	F	G	I	A	Q	D	.	.	.	.	.	Y	K	G	Q	C	N	L	R	F	D	D	T	N	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	K	E	D	I	E	Y	V	E	S	I	K	N
Query Conservation											.	.																									.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.																									.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	A	G	E	V	G	M	Y	V	C	G	I	T	V	Y	D	L	C	H	I	G	H	G	R	T	F	V	A	F	D	V	V	A	R	Y	L	R	F	L	G	Y	K	L	K	Y	V	R	N	I	T	D	I	D	D	K	I	I	K	R	A	N	E	N	G	E	S	F	V	A	M	V	D	R	M	I	A	E	M	H	K
Template Known Secondary structure		B	T	T										B	S	S	S			B																				T	T									B	B			S											T	S
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.								.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.
Query Sequence		D	V	E	W	L	G	F	H	W	S	G	N	V	R	Y	S	S	D	Y	F	D	Q	L	H	A	Y	A	I	E	L	I	N	K	G	L	A	Y	.	.	.	.	.	.	.	V	D	E	L	T	P	E	Q	I	R	E	Y	R	G	T	L	T	Q	P	G	K	N	S	P	Y	R	D	R	S	V	E	E	N	L	A	L
Query Conservation																																							.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	F	D	A	L	N	I	L	R	P	D	M	E	P	R	A	T	H	H	I	A	E	I	I	E	L	T	E	Q	L	I	A	K	G	H	A	Y	V	A	D	N	G	D	V	M	F	D	V	P	.	.	.	.	.	.	.	.	.	.	.	.	T	D	P	T	Y	G	V	L	S	R	Q	D	L	D	Q	L	Q	A	G
Template Known Secondary structure						T	T					S	B			B	T	T	T															T	T	S					T	T	S						G	G	.	.	.	.	.	.	.	.	.	.	.	.	G		T	T	T	T	T	T	T	T									T
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.													.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.											.	.	220	.	.	.	.	.	.
Predicted Secondary structure																																																			.												.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.												.	.	.	.	.	.	.	.	.	.
Query Sequence		F	E	K	M	R	A	G	G	F	E	E	G	K	A	C	L	R	A	K	I	D	M	A	S	P	F	I	V	M	R	D	P	V	L	Y	R	I	K	F	A	E	H	H	Q	T	G	N	K	W	.	C	I	Y	P	M	Y	D	F	T	H	C	.	.	.	.	.	.	.	.	.	.	I	S	D	A	L	E	G	I	T
Query Conservation																																																			.												.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.												.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	V	D	V	V	D	D	K	R	N	P	M	D	F	V	L	W	K	M	S	K	E	G	E	P	S	W	P	S	P	W	G	A	G	R	P	G	W	H	I	E	C	S	A	M	N	C	K	Q	L	G	N	H	F	D	I	H	G	G	G	S	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S			S		S	S	T	T										S	S	S			B			T	T		S					T	T													S	S								G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																			167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	S	L	C	T	L	E	F	Q	D	N	R	R	L	Y	D	W	V	L	D	N	I	T	I	P	V	H	P	R	Q	Y	E	F	S	R	L	N	L	E	Y	T	V	M	S	K	R	K	L	N	L	L	V	T	D	K	H	V	E	G	W	D	D	P	R	M	P	T	I	S	G	L	R	R	R	G	Y	T	A	A	S
Query Conservation
Alig confidence						.	.	.									.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation						.	.	.									.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Sequence		L	M	F	P	.	.	.	H	H	E	N	E	I	A	Q	.	.	S	T	C	A	H	D	G	Q	Y	V	N	Y	W	M	H	S	G	M	V	M	V	D	R	E	K	M	S	K	S	L	G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	F	T	V	R	D	V	L	K	.	Y	Y	D	A	E	T
Template Known Secondary structure		G	T	T	T	.	.	.									.	.					S	S	S															T	T					T	T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			B					T	T	.	T	S
Template Predicted Secondary structure						.	.	.									.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template SS confidence
		230	.	.	.				.	.	.	.	.	.	240	.			.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.																.	.	.	.	.	.	280	.	.		.	.	.	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	E	F	C	K	R	I	G	V	T	K	Q	D	N	T	I	E	M	A	S	L	E	S	C	I	R	E	D
Query Conservation
Alig confidence													.
Template Conservation													.
Template Sequence		V	R	Y	F	L	M	S	G	H	Y	R	.	S	Q	L	N	Y	S	E	E	N	L	K	Q	A	R	A	A	L
Template Known Secondary structure							T	S	S		T	T	.	S
Template Predicted Secondary structure													.
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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