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Job DescriptionP00962
Confidence99.42%DateThu Jan 5 10:57:24 GMT 2012
Rank30Aligned Residues293
% Identity12%Templatec1pfuA_
PDB info PDB header:ligaseChain: A: PDB Molecule:methionyl-trna synthetase; PDBTitle: methionyl-trna synthetase from escherichia coli complexed2 with methionine phosphinate
Resolution1.91 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50...... ...60.........70.... .....80.........
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Query Sequence  VHTRFPPEPNGYLHIGHAKSICLNFGIAQ. . DYKGQCNLRFDDTNPVKE. . . . . . . . . . . . . . . . DIEYVESIKNDVEWL
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Template Sequence  LVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGF
Template Known Secondary structure 


BTTS

BTT
B

STS
T
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   8.10.........20.........30.........40.........50.........60.........70.........80.......
 
   90....... ..100.........110.........120.........130.........140.........150.........160........
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Query Sequence  GFHWSGNV. RYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEE
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Template Sequence  NISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSP
Template Known Secondary structure  T


SSSSTT
TTTT

GGG
TTT

SSTTB
TTT

B

G
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   88.90.........100.........110.........120.........130.........140.........150.........160.......
 
   169170.........180..... ....190..... ....
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Query Sequence  GKACLRAKIDMASPFIV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . MRDPVLYRIK. . . . . . . . FAEH
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Template Sequence  TELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPG
Template Known Secondary structure  GG
TTT




GGGGTS
S





SS
SS
B
TT
TT
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   168.170.........180.........190.........200.........210.........220.........230.........240.......
 
   200.........210.........220...... ...230...... ...240.........250.........260...
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Query Sequence  HQTGNKWCIYPMYDFTHCISDALEGIT. . . . . . . . . . . . . . . HSLCTLEFQD. NRRLYDWVLDNITIPVHPRQYEFSRLN
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Template Sequence  KYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVHGYVT
Template Known Secondary structure 
T
SSBTT

SGGGTTTB


S

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   248.250.........260.........270.........280.........290.........300.........310.........320.......
 
   264.....270.........280.........290.........300.........310... ......320.........330......
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Query Sequence  LEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKR. IGVTKQDNTIEMASLESCIREDL
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Template Sequence  VNGAKMSKSRGT. . . . . . . . . . . . . . . FIKASTWLNH. FDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADI
Template Known Secondary structure  TTBS

TTTT
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B.S


SS




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   328.330......... 340......... 350.........360.........370.........380.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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