Job Description P00962 Confidence 97.19% Date Thu Jan 5 10:57:24 GMT 2012 Rank 61 Aligned Residues 172 % Identity 17% Template c1jiiA_ PDB info PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: crystal structure of s. aureus tyrrs in complex with sb-219383 Resolution 3.20 Å

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		35	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.						.	70	.	.															.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure							.																														.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.																														.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	P	N	G	Y	.	L	H	I	G	H	A	K	S	I	C	L	N	F	G	I	A	Q	D	Y	K	G	Q	C	N	L	R	F	D	D	.	.	.	.	.	T	N	P	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	E	D	I	E	Y	V	E	S	I	K	N	D	V	E	W	L	G	F	H	W	S
Query Conservation							.																														.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.								.																						.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.
Template Sequence		D	P	T	A	D	S	L	H	I	G	H	L	L	.	P	F	L	T	L	R	R	F	Q	E	H	G	H	R	P	I	V	L	I	G	G	G	T	G	M	I	G	D	P	S	G	K	S	E	E	R	V	L	Q	T	E	E	Q	V	D	K	N	I	E	G	I	S	K	Q	M	H	N	I	F	E	F	G	T	D	H	G
Template Known Secondary structure				S	S	S	S		B						.												T									T	T	T	G	G	G				S	S		S	S																									S			S		S	S	S
Template Predicted Secondary structure															.
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	V	R	Y	S	S	D	Y	F	D	Q	L	H	A	Y	A	I	E	L	I	N	K	G	L	A	Y	V	D	E	L	T	P	E	Q	I	R	E	Y	R	G	T	L	T	Q	P	G	K	N	S	P	Y	R	D	R	S	V	E	E	N	L	A	L	F	E	K	M	R	A	G	G	F	E	E	G	K	A	C	L	R
Query Conservation
Alig confidence																.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.
Template Conservation																.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	L	V	N	N	R	D	W	L	G	Q	I	S	.	L	I	S	F	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Y	G	K	H	V	G	V	N	Y	M	L	G	K	D	S	I	Q	S	R	L	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T					T	T			.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	G	G	G							T	T		T	T						.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.																													.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.					.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure																																																			.	.	.	.
Query SS confidence																																																			.	.	.	.
Query Sequence		A	K	I	D	M	A	S	P	F	I	V	M	R	D	P	V	L	Y	R	I	K	F	A	E	H	H	Q	T	G	N	K	W	C	I	Y	P	M	Y	D	F	T	H	C	I	S	D	A	L	E	.	.	.	.	G	I	T	H	S	L	C	T	L	E	F	Q	D	N	R	R	L	Y	D	W	V	L	D	N	I	T	I
Query Conservation																																																			.	.	.	.
Alig confidence		.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.								.	.	.	.
Template Conservation		.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.
Template Sequence		.	.	.	.	.	.	E	H	G	I	S	Y	T	E	F	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	T	I	L	Q	.	.	.	A	I	D	F	G	H	L	N	R	E	L	N	C	K	I	Q	V	G	G	S	D	Q	W	G	N	I	T	S	G	I	E	L	M	R	R	M	Y	G
Template Known Secondary structure		.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.											T									G	G	G															T	S
Template Predicted Secondary structure		.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.
Template SS confidence
								160	.	.	.	.	.	.	.	.	.																			170	.	.	.	.				.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		251	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		P	V	H	P	R	Q	Y	E	F	S	R	L	.	N	L	E	Y	T	V	M	S	K	R	K
Query Conservation														.
Alig confidence														.
Template Conservation
Template Sequence		Q	T	D	A	Y	G	L	T	I	P	L	V	T	K	S	D	G	K	K	F	G	K	S	E
Template Known Secondary structure			S	S												S	S				T	T	B		S
Template Predicted Secondary structure
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions