Job Description P00962 Confidence 100.00% Date Thu Jan 5 10:57:24 GMT 2012 Rank 14 Aligned Residues 268 % Identity 12% Template c1irxA_ PDB info PDB header:ligase Chain: A: PDB Molecule:lysyl-trna synthetase; PDBTitle: crystal structure of class i lysyl-trna synthetase Resolution 2.60 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.						.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.
Query SS confidence																																															.	.	.	.	.
Query Sequence		R	Q	I	I	D	E	D	L	A	S	G	K	H	T	T	V	H	T	R	F	P	P	E	P	N	G	Y	L	H	I	G	H	A	K	S	I	C	L	N	F	G	I	A	Q	D	.	.	.	.	.	Y	K	G	Q	C	N	L	R	F	D	D	T	N	P	V	K	E	D	I	E	Y	V	E	S	I	K	N	D	V	E
Query Conservation																																															.	.	.	.	.
Alig confidence												.	.	.																																	.	.	.	.	.																												.	.
Template Conservation												.	.	.																																																																	.	.
Template Sequence		D	K	I	I	R	E	R	G	E	K	.	.	.	E	K	Y	V	V	E	S	G	I	T	P	S	G	Y	V	H	V	G	N	F	R	E	L	F	T	A	Y	I	V	G	H	A	L	R	D	K	G	Y	E	V	R	H	I	H	M	W	D	D	Y	D	R	F	R	K	V	P	R	N	V	P	Q	E	W	K	.	.	D
Template Known Secondary structure								S				.	.	.	S											S	S																						T	T	T											T	T	S	B						S	S	S		G	G	G	G	.	.	G
Template Predicted Secondary structure												.	.	.																																																																	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.				20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.			.
		88	.	90	.	.	.	.	.	.	.												.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.					.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.
Query Sequence		W	L	G	F	H	W	S	G	N	V	.	.	.	.	.	.	.	.	.	.	.	R	Y	S	S	D	Y	F	D	Q	L	H	A	Y	A	I	E	L	I	N	K	G	L	A	Y	V	D	E	L	T	P	E	Q	I	R	E	Y	R	G	T	L	T	Q	P	G	.	.	.	.	K	N	S	P	Y	R	D	R	S	V	E
Query Conservation												.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.															.																														.	.	.	.
Template Conservation																																					.
Template Sequence		Y	L	G	M	P	I	S	E	V	P	D	P	W	G	C	H	E	S	Y	A	E	H	F	M	R	K	F	E	E	E	V	E	K	L	G	.	I	E	V	D	L	L	Y	A	S	E	L	Y	K	R	G	E	Y	S	E	E	I	R	L	A	F	E	K	R	D	K	I	M	E	I	L	N	K	Y	R	E	I	A	K	Q
Template Known Secondary structure		G	T	T	S	B	G	G	G	S			T	T	S	S	S	S	S															T	T	T	.														T	T	T	T										T															T	T
Template Predicted Secondary structure																																					.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.								.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.
Query Sequence		E	N	L	A	L	F	E	K	M	R	A	G	.	.	.	.	.	.	.	G	F	E	E	G	K	A	C	L	R	A	K	I	D	M	A	S	P	F	I	V	M	R	D	P	V	L	Y	R	I	K	F	A	E	H	H	Q	T	G	N	K	W	C	I	Y	P	M	Y	D	F	T	H	C	I	S	D	A	L	E	G	I
Query Conservation														.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	P	L	P	E	N	W	W	P	A	M	V	Y	C	P	E	H	R	R	E	A	E	I	I	E	W	D	G	G	W	K	V	K	Y	K	C	P	E	G	H	E	G	W	V	D	I	R	S	G	N	V	K	.	.	.	.	.	.	.	.	.	.	.	.	L	R	W	R	V	D	W	P	M	R	W	S	H	F	G	V
Template Known Secondary structure						T	T			S						T	T	T											S	S	S							S	S	S							T	T	S	S				.	.	.	.	.	.	.	.	.	.	.	.														S
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.													.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		226	.	.	.	230	.	.	.	.	.	.						.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure													.	.	.	.	.
Query SS confidence													.	.	.	.	.
Query Sequence		T	H	S	L	C	T	L	E	F	Q	D	.	.	.	.	.	N	R	R	L	Y	D	W	V	L	D	N	I	T	I	P	V	H	P	R	Q	Y	E	F	S	R	L	N	L	E	Y	T	V	M	S	K	R	K	L	N	L	L	V	T	D	K	H	V	E	G	W	D	D	P	R	M	P	T	I	S	G	L	R	R	R
Query Conservation													.	.	.	.	.
Alig confidence													.	.	.	.	.							.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	F	E	P	A	G	K	D	H	L	V	A	G	S	S	Y	D	T	G	K	E	I	.	I	K	E	V	Y	G	K	E	A	P	L	S	L	M	Y	E	F	V	G	I	K	G	Q	N	V	I	L	L	S	D	L	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			B									S	T	T	S									.											B										S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.		.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	T	A	A	S	I	R	E	F	C	K	R	I	G	V	T	K	Q	D	N	T	I	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	V	L	E	P	G	L	V	R	F	I	Y	A	R	H	R	P	N	K	E	I	K	I	D
Template Known Secondary structure		T	T	S											S	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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