Job Description P31806 Confidence 72.78% Date Thu Jan 5 11:48:44 GMT 2012 Rank 215 Aligned Residues 142 % Identity 17% Template c3ot1B_ PDB info PDB header:structural genomics Chain: B: PDB Molecule:4-methyl-5(b-hydroxyethyl)-thiazole monophosphate PDBTitle: crystal structure of vc2308 protein Resolution 1.16 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120				.	.	.	.	.	.	.	.	.	130	.		.	.	.
Predicted Secondary structure																																																																.	.	.												.
Query SS confidence																																																																.	.	.												.
Query Sequence		D	A	R	H	W	L	V	L	C	G	H	G	N	N	G	G	D	G	Y	V	V	A	R	L	A	K	A	V	G	I	E	V	T	L	L	A	Q	E	S	D	K	P	L	P	E	E	A	A	L	A	R	E	A	W	L	N	A	G	G	E	I	H	.	.	.	A	S	N	I	V	W	P	E	S	V	D	.	L	I	V
Query Conservation																																																																.	.	.												.
Alig confidence																																															.	.	.	.	.	.	.	.	.	.								.	.	.												.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.
Template Sequence		X	S	K	R	I	L	V	P	V	A	H	G	S	E	E	X	E	T	V	I	I	V	D	T	L	V	R	A	G	F	Q	V	T	X	A	A	V	G	D	K	L	Q	V	Q	G	.	.	.	.	.	.	.	.	.	.	S	R	G	V	W	L	T	A	E	Q	T	L	E	A	C	S	A	E	A	F	D	A	L	A	L
Template Known Secondary structure												T	T																T	T								S	S	S		S					.	.	.	.	.	.	.	.	.	.	T	T	S						S			G	G	G			G	G	G		S
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.											50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	L	L	G	T	G	L	R	Q	A	P	R	E	S	I	S	Q	L	I	D	H	A	N	S	H	P	A	P	I	V	A	V	D	I	P	S	G	L	L	A	E	T	G	A	T	P	G	A	V	I	N	A	D	H	T	I	T	F	I	A	L	K	P	G	L	L	T	G	K	A	R	D	V	T	G	Q	L	H	F
Query Conservation
Alig confidence																																																			.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.
Template Sequence		P	G	G	V	G	G	A	Q	A	F	A	D	S	T	A	L	L	A	L	I	D	A	F	S	Q	Q	G	K	L	V	A	A	I	A	T	P	A	L	V	F	A	K	Q	Q	K	F	V	G	A	.	.	.	.	.	.	R	X	T	C	H	P	N	F	F	D	H	I	P	S	E	R	L	S	R	Q	R	V	C	Y	Y
Template Known Secondary structure													T														T	T												T	T	T	T	T	T		S	T	T		.	.	.	.	.	.		B				G	G	G	G	G	G	S		T	T	T	B			S	S
Template Predicted Secondary structure																																																			.	.	.	.	.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.							.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		215	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T
Template Known Secondary structure		G	G
Template Predicted Secondary structure
Template SS confidence
		150	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions