Job Description P31806 Confidence 100.00% Date Thu Jan 5 11:48:44 GMT 2012 Rank 9 Aligned Residues 205 % Identity 24% Template c2dg2D_ PDB info PDB header:protein binding Chain: D: PDB Molecule:apolipoprotein a-i binding protein; PDBTitle: crystal structure of mouse apolipoprotein a-i binding2 protein Resolution 2.45 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.							.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.
Query Sequence		P	H	T	V	W	Y	A	D	D	I	R	R	G	E	R	E	A	A	D	V	L	G	L	T	L	Y	E	L	M	L	R	A	G	E	A	A	F	Q	V	C	R	S	A	Y	P	.	.	.	.	.	.	D	A	R	H	W	L	V	L	C	G	H	G	N	N	G	G	D	G	Y	V	V	A	R	L	A	K	A	V	G
Query Conservation																																															.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.
Template Conservation
Template Sequence		A	V	K	Y	L	S	Q	E	E	A	Q	A	V	D	Q	E	L	F	N	E	Y	Q	F	S	V	D	Q	L	X	E	L	A	G	L	S	C	A	T	A	I	A	K	A	Y	P	P	T	S	X	S	K	S	P	P	T	V	L	V	I	C	G	P	G	N	N	G	G	D	G	L	V	C	A	R	H	L	K	L	F	G
Template Known Secondary structure						B															S	S																							S		G	G	G	S	S	S	S	S									S	S																T	T
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.					.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																																									.	.	.	.
Query SS confidence																																									.	.	.	.
Query Sequence		I	E	V	T	L	L	A	Q	E	S	D	K	P	L	P	E	E	A	A	L	A	R	E	A	W	L	N	A	G	G	E	I	H	A	S	N	I	V	W	.	.	.	.	P	E	S	V	D	L	I	V	D	A	L	L	G	T	G	L	R	Q	A	P	R	E	S	I	S	Q	L	I	D	H	A	N	S	H	P	A	P
Query Conservation																																									.	.	.	.
Alig confidence														.	.																										.	.	.	.
Template Conservation														.	.
Template Sequence		Y	Q	P	T	I	Y	Y	P	K	R	P	N	.	.	K	P	L	F	T	G	L	V	T	Q	C	Q	K	X	D	I	P	F	L	G	E	X	P	P	E	P	X	X	V	D	E	L	Y	E	L	V	V	D	A	I	F	G	F	S	F	K	G	D	V	R	E	P	F	H	S	I	L	S	V	L	S	G	L	T	V	P
Template Known Secondary structure									S	S				.	.	S													T	T			B		S	S			S	S									S						S			T	T							T	T									T	T		S	S
Template Predicted Secondary structure														.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	A	V	D	I	P	S	G	L	L	A	E	T	G	A	T	P	G	A	V	I	N	A	D	H	T	I	T	F	I	A	L	K	P	G	L	L	T	G	K	A	R	D	V	T	G	Q	L	H	F	D	S	L	G	L	D	S	W	L	A	G	Q
Query Conservation
Alig confidence																					.	.																									.	.	.	.
Template Conservation																					.	.																									.	.	.	.
Template Sequence		I	A	S	I	D	I	P	S	G	W	D	V	E	K	G	N	P	S	G	.	.	I	Q	P	D	L	L	I	S	L	T	A	P	K	K	S	A	T	H	F	T	G	R	Y	H	.	.	.	.	Y	L	G	G	R	F	V	P	P	A	L	E	K	K
Template Known Secondary structure							.		T	T	S	B	T	T	T	B		T	T	S	.	.				S						S	S		B	G	G	G	G	S			S	S			.	.	.	.
Template Predicted Secondary structure																					.	.																									.	.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.			.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.					.	.	.	230	.	.	.	.	.	.	.	.	.	240

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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