Job Description P06999 Confidence 100.00% Date Thu Jan 5 10:59:52 GMT 2012 Rank 42 Aligned Residues 261 % Identity 18% Template d1vk4a_ SCOP info Ribokinase-like Ribokinase-like Ribokinase-like Resolution 1.91

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		D	S	A	T	I	T	P	Q	I	Y	P	E	G	K	L	R	C	T	A	P	V	F	E	P	G	G	G	G	I	N	V	A	R	A	I	A	H	L	G	G	S	A	T	A	I	F	P	A	G	G	A	.	T	G	E	H	L	V	S	L	L	A	D	E	N	V	P	V	A	T	V	E	A	K	D	W	T	R	Q	N
Query Conservation																																																					.
Alig confidence																																																					.				.	.
Template Conservation																																																									.	.
Template Sequence		H	X	I	T	F	I	G	H	V	S	K	D	V	N	V	V	D	G	K	R	E	I	A	Y	G	G	G	V	V	X	G	A	I	T	S	S	L	L	G	V	K	T	K	V	I	T	K	C	T	R	E	D	V	S	K	.	.	F	S	F	L	R	D	N	G	V	E	V	V	F	L	K	S	P	R	T	T	S	I	E
Template Known Secondary structure		S																T	T																				T	T											T	T	T	G	G	G	.	.	G	T	T	T	G	G	G	T									S	S
Template Predicted Secondary structure																																																									.	.
Template SS confidence
		0	.	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		L	H	V	H	V	E	A	S	G	E	Q	Y	R	F	V	M	P	G	A	A	L	N	E	D	E	F	R	Q	L	E	E	Q	V	L	E	I	E	S	G	A	I	L	V	I	S	G	S	L	P	P	G	V	K	L	E	K	L	T	Q	L	I	S	A	A	Q	K	Q	G	I	R	C	I	V	D	S	S	G	E	.	.
Query Conservation																																																																																.	.
Alig confidence					.	.	.	.	.																				.	.	.	.	.	.	.	.																				.	.	.	.																					.	.
Template Conservation					.	.	.	.	.																				.	.	.	.	.	.	.	.																				.	.	.	.
Template Sequence		N	R	Y	.	.	.	.	.	T	R	E	S	F	L	I	S	A	A	D	P	F	T	E	S	D	L	A	.	.	.	.	.	.	.	.	F	I	E	G	E	A	V	H	I	N	P	L	W	Y	G	E	F	P	E	.	.	.	.	D	L	I	P	V	L	R	R	K	V	X	F	L	S	A	D	A	Q	G	F	V	R
Template Known Secondary structure					.	.	.	.	.															G	G	G	G	G	.	.	.	.	.	.	.	.	G			S	S							S	S	T	T	S	S		G	.	.	.	.	G	G									S						T
Template Predicted Secondary structure					.	.	.	.	.																				.	.	.	.	.	.	.	.																				.	.	.	.
Template SS confidence
		78	.	80						.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.									100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.					.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
													171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	A	L	S	A	A	L	A	I	G	N	I	E	L	V	K	P	N	Q	K	E	L	S	A	L	V	N	R	E	L	T	Q	P	D	D	V	R	K	A	A	Q	E	I	V	N	S	G	K	A	K	R	V	V	V	S	L	G	P	Q	G	A	L	G	V	D	S	E	N	C	I
Query Conservation		.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.																												.	.
Template Conservation																																										.	.	.	.	.	.																												.	.
Template Sequence		V	P	E	N	E	K	L	V	Y	R	D	W	E	X	K	E	K	Y	L	K	Y	L	D	L	F	K	V	D	S	R	E	A	E	T	L	T	G	T	N	D	.	.	.	.	.	.	L	R	E	S	C	R	I	I	R	S	F	G	A	K	I	I	L	A	T	H	A	S	G	V	I	V	F	.	.	D	G	N	F	Y
Template Known Secondary structure					T	T								T	T					G	G	G		S														S		S		.	.	.	.	.	.											T	T		S	S						T	T						.	.	S	S	S
Template Predicted Secondary structure																																										.	.	.	.	.	.																												.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.							.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.			.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		Q	V	V	P	P	P	V	K	S	Q	S	T	V	G	A	G	D	S	M	V	G	A	M	T	L	K	L	A	.	E	N	A	S	L	E	E	M	V	R	F	G	V	A	A	G	S	A	A	T	L	N	Q	G	T	R	L	C	S	H	D	D	T	Q	K	I
Query Conservation																														.
Alig confidence																														.																										.	.
Template Conservation																																																								.	.
Template Sequence		E	A	S	F	R	S	W	S	L	E	G	R	T	G	R	G	D	T	C	T	A	A	F	L	V	G	F	V	F	K	K	X	S	I	E	K	A	T	K	F	A	A	A	V	T	S	V	K	X	R	H	P	G	P	.	.	L	R	R	E	D	L	E	A	I
Template Known Secondary structure								S	S	G	G	G	G	T	T															T	S																			T	T	S	S	S	S	.	.			G	G	G	G	G	G
Template Predicted Secondary structure																																																								.	.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.			.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions